Shewanella psychromarinicola: EGC80_12295
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Entry
EGC80_12295 CDS
T09848
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr01501
beta-Lactam resistance
spsr01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
EGC80_12295
01503 Cationic antimicrobial peptide (CAMP) resistance
EGC80_12295
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
spsr02000
]
EGC80_12295
01504 Antimicrobial resistance genes [BR:
spsr01504
]
EGC80_12295
Transporters [BR:
spsr02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
EGC80_12295
Antimicrobial resistance genes [BR:
spsr01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
EGC80_12295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
AZG35600
UniProt:
A0A3N4E0X3
LinkDB
All DBs
Position
complement(2791545..2794817)
Genome browser
AA seq
1090 aa
AA seq
DB search
MTTPNESMKLGISGSIAKAFQHSAITPLLAILGLLLGLFAVIITPKEEEPQIDVTFADVF
IPYPGATPTEVENQVTLPAERIISQIKGIDTLYSFSQPDGALIIAIFDVGVPRDEAVVNL
YNQLYSNSDKFNHAAGIGEPLIKPRGIDDVPIVGLTLWSQDPNITAEQLTLVASGLETEL
KRIPGTREIYSQGGHEMVLNVRIDPVKMNSFGVTFNDISATLQDNNQLSTVGSMTQFNQV
IKLQAGQFLQTPDDVNNLLIKVNQSDTTTEKSPFPRAVYLSDVADVSLKSDIPKQHVWHV
TDKGTYPAITIAIGKQAGQNAVDIADAVLAKIDAVDNVLIPDNVNVAISRNYGKTAGDKS
NTLIFKLIFATSAVVLLVFFTMGLRESAVVGVAIIITLAITLFASWAWGFTLNRISLFAL
IFSIGILVDDAIVVVENIHRHMAMSDKPISELIPHAVDEVGGPTILATFTVIAALLPMAF
VSGLMGPYMSPIPINASMGMIISLLIAFIMTPWLSRILLKPHKKSHSSNNKATDTGVPVE
EDNRLTRLFTRIMSPFLLGEHAPKARKGLALGIVLLIAFAIALPVMQAVVLKMLPFDNKS
EFQVMVDMPEGTPVEQTQRVLQDLSQYLSSVEEVEHLQLYAGTHAPMNFNGLVRHYFLRS
SQELGEIQVNLVDKKHRDRDSHTIASSVREPLQKIGLRYQANIKIVEVPPGPPVWSPIVA
EVYAPNTELREQAANDLLQRFRDTEYVVDMDIYLPAQQQKWQVVIDRNKASLMGVSYASI
VDTISTAVDGKDVSYLHQAQLAHPTPIRLQLDEAAKVDLKQVLLLRLPTQSGETVPLTEL
VKVQQQVINAPIVHKNMVPMIMVIADMAGPTGSPLYGMFDMVSQINQQNEQGNSSYPIKQ
NLVNQPDGLTDVSILWDGEWKITYETFRDMGIAYAVGMIAIYLLVVGQFKSYIVPLIIMA
PIPLTIIGVMPGHALLGAQFTAPSMIGMIALAGIIVRNSILLVDFINQQTAAGVPLERAV
IHSGAVRAKPIMLTALAAIIGALFIIDDPIFNGLAISLIFGIFISTILTLVVIPVLYFSV
MKNKLVITAK
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaccaaatgaatcaatgaaactcggcatttcaggctccatagcaaaggcattt
caacacagtgctattactccattattggctattttaggtttattactaggcctttttgca
gtgattattacccccaaagaagaagagccgcaaattgatgtcacttttgcagatgtgttt
atcccctacccaggagctacaccaacggaagttgaaaaccaggtcaccttgcctgcagaa
cggatcatttctcaaataaaaggcattgataccctttactcattttctcagcccgatggc
gcgctcattatcgctatttttgacgtcggcgttccacgagatgaagccgtggttaattta
tacaatcaactgtattcaaacagcgataagtttaaccatgcagcaggcattggtgagccg
ttaatcaaacctagaggtattgatgacgtacctatagtagggttgacgctctggtctcaa
gatccaaacatcactgcagagcagcttaccttggtcgcatcgggcctagaaaccgaacta
aaacggataccgggtactcgagagatttatagccaaggtggccacgagatggtgttaaat
gtgcgtattgatcctgtcaagatgaacagtttcggcgtaacgttcaacgatattagtgcc
acattacaagataataaccaactgtctacagtcggctcgatgacgcagtttaatcaagta
ataaaactgcaagcggggcagtttttacagacgcctgatgatgtgaataatctgctgatt
aaagttaatcagagtgatacaacaacggagaaaagtccatttcctcgtgcagtttattta
tctgatgtcgccgatgtgagccttaaaagtgatattcctaaacagcatgtttggcacgta
acagataagggtacttacccggctataacaatcgctattggtaaacaggcagggcaaaat
gccgtcgacattgctgatgccgtattagccaaaatcgatgctgtcgataacgtattaatt
cccgataatgtcaatgtcgctatctctcgcaactacggtaaaaccgctggagataaatct
aatacacttattttcaaattgatctttgccacatctgcggtagtactactggtatttttc
accatgggacttcgtgagtctgccgtcgttggtgtagccattatcattactctcgccata
accttatttgcatcttgggcatggggattcaccctaaaccgaatttcattgttcgcactt
atattctccattggtatcttggtcgatgacgccatcgtggtggtagagaatattcatcgg
catatggcaatgagtgataaacccataagcgagctcatacctcatgccgttgatgaagtc
ggtgggccaactatattagccaccttcaccgttatcgccgccctattgccaatggcattc
gtatccggactaatgggtccatacatgagcccaattccgattaatgccagtatgggaatg
attatttcgctattaatcgcgtttattatgaccccatggttaagccgcatattgttaaaa
cctcataaaaagtcacatagctcaaacaataaagcgactgacacaggcgtaccagtagaa
gaagacaatcgattaacacgtctatttacgcgaataatgagtccttttttactcggcgaa
catgcgccaaaagcgcgaaaaggcttggctttagggatcgtattattgattgccttcgct
atcgccttgcctgtaatgcaagctgtagtactaaaaatgctgccttttgataataagtct
gagtttcaggtgatggtcgacatgcctgaaggcacccctgtggaacaaactcaaagagta
ttgcaagatctcagtcaatatctcagcagtgtagaagaagttgagcatttacagttgtat
gcgggcacccatgcacctatgaattttaatggcttagttcgtcattattttttacgcagc
agccaagagctcggtgaaattcaggtcaatctagtggataaaaaacatcgagaccgcgac
agtcataccattgcatcatctgtacgcgagccgttgcaaaaaattggcctacgttatcaa
gccaatatcaaaattgttgaggtaccaccaggcccaccggtttggtcacctatagttgct
gaggtttatgcgcctaacaccgagttacgtgaacaagcagctaatgacttattgcaacgt
ttcagagataccgaatacgttgttgatatggatatttatttgcctgcgcaacaacaaaag
tggcaagtggtcattgatcgaaataaagccagcttaatgggtgtttcttacgccagtatt
gtggatacgatcagcactgccgtggatggtaaggacgtcagttacttgcatcaagcacag
ttagctcatcccacaccgattagattacagcttgatgaagccgctaaagtagatctaaag
caagtcttgttattacgcctaccgactcaatcaggtgaaacagtaccactgacagaatta
gttaaggtgcaacaacaagtgattaatgcacctattgttcataaaaatatggtgcctatg
ataatggttattgccgatatggcagggccaacaggtagcccactttatggcatgtttgat
atggtcagtcaaattaatcaacaaaatgaacaaggtaactcaagttatcctattaaacaa
aatctggtgaatcagccagatggattaaccgacgtttccattttgtgggacggtgaatgg
aaaatcacctatgaaactttccgtgatatgggcattgcatacgccgtcggtatgattgcg
atttacttactcgttgtgggtcaatttaaatcttatatcgtgccgttaatcatcatggcg
ccaattccattaaccattatcggcgttatgcctggacacgctttgttaggcgctcaattt
actgcaccgtcaatgataggcatgattgcattagcaggcattattgttcgaaactctatt
ttattggttgatttcattaatcaacaaacggctgcgggagtgcccttagagcgagccgtg
atccactcaggtgcggtaagggcaaagccgattatgttgactgcattagcagcaataatt
ggcgcattattcattattgatgaccctatttttaacggtttagccatcagtttaattttt
ggaatttttatctcaaccattttaacgttagtggtgatccccgtattgtatttttcggtg
atgaaaaataaactcgttatcacagctaagtaa
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integrated database retrieval system
