Shewanella psychrophila: Sps_00357
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Entry
Sps_00357 CDS
T05063
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sps_00357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsw03021
]
Sps_00357
03400 DNA repair and recombination proteins [BR:
spsw03400
]
Sps_00357
Enzymes [BR:
spsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sps_00357
Transcription machinery [BR:
spsw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sps_00357
DNA repair and recombination proteins [BR:
spsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sps_00357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AQS35569
UniProt:
A0A1S6HJ85
LinkDB
All DBs
Position
389842..393873
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPASIMLRALDYSTQDILDLFFDRVNFKIKKDSLVMD
LVAERLRGETASYDIKDSDGSILVEKGRRVTARHIRQLEKSKTSELEVPVDYIAGKISGQ
DYIDPDTGEVLVSANAEITLEDLAKLSMAGIKEISTLYINDLDNGAYMSDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLSIGEDEGSGI
LSKEDIVAVMKNIITIRNGGDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVEDGVV
TDQIDYLSAIEEGRYVIAQANIEIDNNGRLLEEQVACRHKGDSTFMRGTDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERIIAVDSGVVVAAK
RGGSVDYVDASRIVVKVNESELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQAKKD
LTEEFQILEEGVYGRARKLLLNAGFDQAQLDAIPRSQLLVQTIDDEAKQTELEQLAEQHD
ELKADFDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQILEVHMGAAAKGIGDQITAMLEEQRQLA
EIRGYIKEVYELGDEVLQRVDIDSFTDDEVLRLAKNLKGGIPIATPAFDGAKEKEIKEML
ALAKLPTSGQRTLYDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQD
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgtaaagattttggtaaacgtccaaaa
gttttggatatcccttacctactctcaatacagttggactcatttaagaagttcactgat
caagatcctactggtgagcgtggttttgaagccgctttccgtagcgtttttcccatcaag
agcttttctggtaactcagagctgcagtatgtcagctataagttaggtgagcctgttttt
gatgtgaaagagtgtcagatccgcggtgttacatactccgcaccattgcgcgtgaaattg
cgtatggtgttgtatgaccgtgaagctgcacctggcacagtcaaagacattaaagaacaa
gaagtctacatgggggatatccctctaatgacagacaacggtacctttgttatcaatggt
actgagcgtgttatcgtatctcagttacaccgttcacccggtgtgttcttcgatcatgac
cgtggcaagacccactcttcaggtaaagtgttatataacgcacgtatcatcccttaccgt
ggttcttggttagattttgaattcgatccaaaagatgcattgtttgtacgtatcgatcgc
cgtcgtaaacttccggcgtctatcatgttgcgtgcattagattattcgactcaggatatt
ctggatctattcttcgatcgtgttaatttcaagatcaagaaagattcattagtgatggat
cttgttgcagaacgtcttcgtggcgagactgcaagttacgacatcaaagattcagatggc
agtatcttagttgagaagggacgccgcgttactgcacgtcacattcgtcagctagagaag
tcaaagacctctgagttagaagtgccggtagattacattgcaggtaagatttctggtcag
gattatatcgatcctgatacaggcgaagtactggtttcagctaacgctgagatcacactt
gaagatcttgctaagctttcaatggccggcatcaaagaaataagcactctgtatatcaac
gatcttgataacggtgcttacatgtcagataccctacgtattgactctacaactaaccgc
ctagaggcgttggttgagatctatcgtatgatgcgtcctggcgagccaccaaccaaagat
gcggctgaaggcctattccagaacttgttcttcagtgaagagcgttatgacctgtctaaa
gtcggtcgtatgaagttcaaccgtcgtctaagcattggcgaagatgaaggttcaggtatc
ctatctaaggaagacatcgttgcggtaatgaagaacatcattactattcgtaacggtggc
gatgaggtcgatgatatcgatcacttgggtaaccgtcgtatccgtagtgttggcgaaatg
gctgagaaccagttccgtgttggtctagttcgtgtagaacgtgccgtacgtgaacgtttg
agtcttggtgatcttaatgagcttatgccacaagatttaatcaacgctaagccaatctct
gcagcagttaaagagttcttcggttcatctcaactgtctcagtttatggatcagaacaac
ccactttcagaagtgactcacaagcgccgtatttcggctcttggtcctggtggtttgact
cgtgaacgtgcaggcttcgaagttcgagatgtacacccgactcattacggtcgtttgtgt
ccaatcgaaactcctgaaggtccaaacattggtctgattaactcgttagcgagtttcgcg
cgtactaactcatatggtttcctcgaaacaccttaccgcaaggtagaagatggtgtggtt
accgatcagatagattatctgtcggcaatcgaagagggtcgttatgttatcgctcaggcg
aatatagagatagataataacggacgcctactcgaagagcaggttgcctgtcgtcataag
ggtgattcaacctttatgcgcggtactgatatccagtatatggatgtatcaccgcaacag
atcatctcagtggcagcctcattgattccgttcctagaacatgatgatgctaaccgagct
ttgatgggcgcgaacatgcaacgtcaagctgtacctacactaagagctgataagccatta
gttggtactggtattgagcgcatcattgcggtcgattcaggcgttgtagttgctgctaag
cgtggtggtagtgtcgattatgttgatgctagccgtattgttgttaaggttaacgaatct
gagctacgtccaggcgaagctggtatcgatatctacaacctgactaagtacacacgttct
aaccagaacacctgtattaaccaacgtccttgttgttctgttggcgacccagtggttcgt
ggtgacgtattggccgatggtccttctacggatctgggtgatctggctcttggtcagaac
atgcgtatcgcgttcatgccttggaacggttacaacttcgaggattcaatcctcatctct
gagcgtgtagctcaggaagatcgtttcactactatccatattcaggagctttcttgtatc
gctcgtgatactaaattgggtagtgaagagatcactgctgatattccaaacgtgggtgag
tctgcgctttctaagctggatgaatcgggtatcgtttatatcggtgccgaagttaagggt
ggcgacatcctagttggtaaagtaacgcctaagggtgaaactcagctgactccagaggag
aaactcctccgagctatcttcggtgagaaggcctctgacgttaaagacagctcgctacgt
gtacctaactcagtgaaaggtactatcatcgacgtccaggtatttacccgtgacggcgtt
gagaaagacaagcgtgcggttgaaatcgaagagatgcatatcgctcaggccaagaaagat
ttgaccgaagagttccaaatcctcgaagagggtgtttatggacgtgcacgtaaactgcta
ttgaatgcaggtttcgaccaggcacaactcgatgctattcctcgttctcagttgctcgta
cagacaattgatgatgaagctaagcagacagaacttgagcagcttgccgagcagcatgac
gaattgaaagcagacttcgataagaagtttgaggtcaagcgtcgtaaaatcacccaaggt
gatgacttagcacctggcgtacttaagatagttaaggtttaccttgctgttaaacgtact
atccaacctggtgataagatggctggtcgtcacggtaacaagggtgttatctctaagatt
aaccctgttgaagacatgccttacgatgagaacggtaacccaatcgacatcgtattgaac
ccgcttggtgtaccatctcgtatgaacatcggtcagatcttagaggttcacatgggcgcc
gcggctaaaggcattggtgatcagatcaccgctatgcttgaagagcagcgtcaattggct
gaaattcgcggttacatcaaagaagtatacgagttaggtgacgaggtgctgcagcgcgtc
gatatcgattcgtttactgatgatgaagtcctgcgtttggccaagaaccttaagggcggt
attccgattgctacaccagcattcgatggtgcgaaagagaaagagatcaaggaaatgctt
gcacttgctaagcttcctacctctggtcaacgtaccttgtatgatggtcgtaccggtaat
gaatttgagcgtcaggtaaccgtaggttacatgtatatgctcaagcttaaccacttggtt
gacgacaagatgcatgctcgttctacgggttcgtacagtcttgttactcagcagccattg
ggtggtaaagctcagtttggtggtcagcgtttcggagagatggaagtatgggcactagaa
gcatacggtgctgcatatactcttcaagagatgctaactgttaagtctgatgatgttaac
ggccgtactcagatgtataaaaacatcgtcgacggtaatcaccagatgcaaccaggcatg
ccagagtcattcaacgtactgttgaaggaaatccgttcactcggtattaatatcgagttg
gatcaagactaa
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