Strongylocentrotus purpuratus (purple sea urchin): 579258
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Entry
579258 CDS
T01019
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu04512
ECM-receptor interaction
spu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
579258
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
579258
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
spu00535
]
579258
Proteoglycans [BR:
spu00535
]
Extracellular matrix (ECM) proteoglycans
Others
579258
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
579258
NCBI-ProteinID:
XP_030838572
UniProt:
A0A7M7NS06
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MMELRKVLCSLRRGIVFISICTLFRINHIKAQLTETVECPGDIRLEENDLPGWDIIRMFE
LDSATIQGVRVVTGSDDVQRAYRLLKNHDISEPASNQFPQGLPDEFSFVSTFKLTDRTGD
DEDWWLWLIRDRAGTPQIGIRLMGEEKALQFIYVNELGQLENVRFDNAMMLFDRNWHKLH
MAVSKNRLDLFVDCLSIGSVALRTRGQVDTLGETLIGRKFSAGGGPVQFILQWMIIHCDR
TFPTRDHCSEISISEATEEPKTCSTICPEGPAGRQGDPGLPGPAGQMGRPGIPGRIGSTG
TKGEKGSEGYRGQPGPIGPVGNPGPRGSPGPGGLNGDPGRAGLKGEMGSNGLPGLPGVPG
DQGPRGYTGQQGDQGRPGDTPTREQLIDIVVSIPGLQGDPGQRGLPGIDGVKGEKGTRGE
YGYRGVEGPKGIRGETGLRGNLGEPGPPGPPGTLGDISIMEIVGGGETQLIPGPAGSPGI
PGIPGDPGIQGFQGDQGERGIKGLSGIKGEKGSGGLRGPRGDTGSAGEAGPMGPPGPRGD
KGSAGPQGPQGLFGPEGERGPAGLAGPRGGSGPQGESGPRGYKGATGSLGFPGFKGDKGS
FGDLGLPGLSGPKGEKGGKGSNGLRGIAGVPGTNGNPGPIGDQGEQGVQGNKGQPGLRGV
RGEKGDEGLPGPMGLTGLRGTKGDIGNTGYTGLPGKDGDSGPRGPQGRQGIKGALGEDGG
RGPVGLIGIPGRRGSKGEIGANGKTGPGGRNGKDGQTGPMGPRGPKGERGDNGDPGSTGP
QGPRGTQGYGGGRGEKGNKGDRGIGGTNGQNGIPGLTPSKDEILRLIERYFQNNIESFEQ
RFRGPPGPPGESIQGEPGPAGILGLSGPTGPMGLSGNPGSMGRPGMLGGVGTPGERGPRG
SRGQKGDRGQGYTGPTGAPGERGLPGKPGIGRPGKDGQPGFPGPAGLPGERGESGQVGDP
GFCEYCNYAPGTYPFQIPPAIDLNNKG
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgatggaactaaggaaagtgctgtgcagcttgagacgcgggatcgtcttcatatctatt
tgtacattatttaggataaatcacataaaagcacaattaacagaaactgtagagtgccct
ggagacatacgattagaagaaaatgacttacctggctgggatattatccgtatgtttgag
ttggactcggctactattcaaggggtgagagtggtaacaggatcagacgatgtgcagaga
gcgtatagactcctcaagaaccatgacatttcagaacccgccagtaatcagtttccccaa
ggtctcccagacgagttttctttcgtatcgaccttcaagctgacggatcgtacaggagat
gatgaagactggtggttatggttgatccgtgacagagcaggcactcctcaaattggcatc
agattgatgggagaggagaaagcacttcagttcatctatgtaaatgagcttggtcagctg
gagaatgttcgtttcgacaacgcgatgatgctgtttgataggaactggcataaactgcac
atggctgtgagtaagaaccgtttggatctcttcgtagactgtctctccattggatcagtg
gccttaaggaccagaggtcaggtcgataccctcggagagactcttattggaaggaagttc
agcgctggaggaggacctgtccagttcatccttcagtggatgatcatccattgtgaccga
accttcccaacccgtgatcattgctctgaaatatcgatatctgaagcgacagaagagccc
aaaacctgctcgacgatctgcccagaaggccctgcaggcagacagggtgatccgggttta
ccaggacctgcaggtcagatggggcgaccaggaataccgggacggataggatcgaccggt
acgaagggtgagaaaggaagcgaaggatacaggggacaaccaggccctataggtccagtg
ggaaaccccggcccaaggggatctcccggaccaggtggactcaatggtgacccaggaaga
gcaggacttaaaggagaaatgggttccaatggcctacccggtcttccaggagtgcctggt
gatcagggaccacgtggttatactggccaacagggggatcaaggacgacctggggacacg
cccacacgagagcaactgatcgacatcgtcgtcagcattccgggactgcaaggcgacccc
ggtcagcgtgggttaccaggcattgacggtgtcaagggagagaaaggcacgcgaggagaa
tacggctacagaggagttgagggaccaaagggtattcgaggcgagacgggactaaggggt
aacctaggcgagcccggtccacccggtccacctggaacactgggcgatatcagcataatg
gaaatcgtcggcggcggagagactcagcttattccaggaccagctggatcccctggcata
cccggtatacctggagacccaggaatacagggatttcaaggtgaccaaggcgagagagga
ataaaaggactttctggcattaagggtgagaaagggtcaggaggattgcgtggcccaaga
ggagacacaggatctgcaggtgaggctggacccatgggaccacctggaccacgaggggat
aaaggcagtgcgggaccccaaggtcctcagggattgtttggaccagagggtgaacgagga
ccagctggattagcaggaccaagaggtggttctggaccacaaggagaatcaggaccaagg
ggttataaaggcgccacaggaagcctcggtttccctgggtttaagggagacaagggaagt
ttcggtgatctgggcttaccaggtctaagtggacctaagggagaaaaaggcggcaaaggt
tcaaatggtctacgtggaatagctggagttccaggaacaaatggtaaccctggaccgatc
ggagaccaaggagagcagggtgtccaaggtaataaaggccagcctggattaagaggagtc
cgaggagaaaagggagatgagggtttgccaggtcccatgggtttgacagggctgcgaggt
actaaaggagacataggcaatactggctacacaggattaccaggaaaggacggtgattca
ggcccaaggggtccccaaggacggcagggaatcaaaggtgctctcggagaggacggcggt
cgaggtccagttggactcataggcatcccgggccgaagagggtctaaaggagaaattggt
gcgaatggcaagaccggtcctgggggtaggaacggaaaagatggtcaaactggtcccatg
ggacctcgtggaccgaaaggagagcgaggtgacaacggtgatccgggcagcacgggccct
caaggtccccggggtacacaggggtatggtggaggaaggggagagaaaggaaacaaagga
gacaggggtatcggaggaacgaacggacagaatggaatccctggtttgactccatcgaaa
gacgaaatcttgcgacttatagaaagatacttccaaaataatatcgaaagctttgagcag
aggttccggggtccgcccggaccaccaggagagagcatccaaggtgaacctggtccggcc
ggtatcttagggctgagtggaccaacgggaccgatgggattgtccggtaacccaggttcc
atgggaaggccaggaatgctgggaggagtaggaacaccaggagaaagaggtccacgtggt
tctaggggccagaaaggagacagaggacaaggatataccggtcctaccggagcaccggga
gaaagaggtttaccaggtaagccaggtattgggcgtcccggcaaagatggtcagcccggc
tttcctggtccggccggtctacctggagaaaggggagagtccggtcaagttggtgatcct
ggtttctgcgaatactgcaactacgccccggggacctatccgttccagataccaccagca
atagaccttaataacaagggttag
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