Semicossyphus pulcher (California sheephead): 138588710
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Entry
138588710 CDS
T10596
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138588710 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138588710 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138588710 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
spul00535
]
138588710 (col9a1b)
Proteoglycans [BR:
spul00535
]
Extracellular matrix (ECM) proteoglycans
Others
138588710 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138588710
NCBI-ProteinID:
XP_069515048
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MAQAPSVRGPLLVLLLQLVLICFAQRSQGAAGPPGPAGVPGIDGIAGERGEDGEDGPSGP
DGDSGKPGSSGLPGIPGNDGLTGPIGDPGSEGPPGQKGEPGKSGPRGTSGVGQDGPPGPP
GPGGLLGEVGKVGPPGAMGVRGPQGPRGPTGPRGAAGMQGNAELCPNSCPPGTPGHPGLP
GMKGHKGVKGEAGEPGKQGHKGEEGDQGGPGEVGSQGPTGPQGLRGATGMMGPKGEMGAR
GLDGDPGPQGVAGATGDQGQRGVMGELGPGGETGVQGRRGITGLPGPKGEAGLPGVDGRE
GIPGMPGAKGGIGKAGAPGEVGLQGLPGLPGSPGPKGSGGSKGDAGQSGFSGTMGSAGKT
GERGEQGEVGPVGPIGGPGDVGEQGPLGPSGKPGARGPKGDPGLPGLPGPSGLPGVKGER
GERGEVGPKGEQGVQGDEGTSGDKGAVGEAGEDGAKGEVGNPGEPGRRGPEGSRGQPGIE
GPPGTPGPRGMQGNRGATGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GVAGLPGKPGLPGPPGAPGDNGFPGQSGTRGLPGLKGPPGVIGVKGPKGEMGDRGSRGPT
ARGPKGQPGSPGLPGEPGKPGYGRDGRDGQRGPPGSHGQAGVPGPPGSAGPNGYCDPSAC
NLQAGAAHQSLDVKGPAGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggcccccagcgttagagggccactgctggttctgcttctgcagcttgtcctt
atctgcttcgctcaaaggagtcaaggagctgctggccctcctggacctgcaggtgtacca
ggaattgatggcatcgctggggagaggggagaagacggcgaggatggtccttctggacct
gatggagactctggtaaacctggatcttcaggattacctgggattcctgggaatgatggt
ttgactggccccattggagatcctggatccgaaggtccccccggacagaaaggtgaacct
ggaaaatctggacctcgtgggacgtctggtgttgggcaagatggaccccccggaccacct
gggcctggaggacttctgggtgaagttggaaaagttggaccacctggggctatgggtgtg
agggggccacagggacctcgtggaccaacagggcccagaggtgcagctggaatgcaaggc
aatgctgagctgtgtccaaactcttgcccacctggaacccctggacatcctggccttcct
ggcatgaagggccacaaaggtgtaaaaggtgaagcaggagaacctggaaaacaagggcac
aagggtgaggagggtgaccagggaggtccaggggaggtcggatcccagggaccaacgggt
cctcagggacttcgtggagccacgggaatgatgggaccgaaaggagagatgggtgctcga
ggtcttgatggagatccaggtccccagggggttgccggggcaactggagatcaaggccag
agaggcgtgatgggcgagcttgggcctggaggtgaaacgggtgttcaagggcggagagga
atcacaggtctgccaggtcccaaaggagaggctggcttgccgggtgttgacggtcgtgag
ggtattcctgggatgccgggagcaaagggaggcattggaaaggcaggcgctcctggagag
gtcggacttcagggactgcctggcctgcctggttcacctggaccaaaaggctctggtggc
tctaagggagacgctggtcaatcaggcttctctggaacaatggggtctgctggaaaaacc
ggtgagcgcggagagcagggagaggtggggcctgtgggaccaattggtggacctggagat
gtaggagagcaaggccctcttggtccatcaggcaagccaggtgcaaggggacccaaaggt
gaccccggccttcctggtctccctggtccttctggcctgcctggggtgaaaggagagagg
ggagagcgtggagaagtaggacctaaaggagagcagggagtacaaggtgatgaaggaacc
tcaggagacaaaggggctgttggtgaggcaggagaagatggcgctaaaggagaggtcggt
aacccaggcgagcccggcagaagaggtcctgagggaagtcgaggacagcctggcatcgag
gggccgcccggcacacctggaccaaggggcatgcagggaaacaggggtgcaactggagtc
agagggtcccagggtcccgcgggcaaagagccgagcgatcagcacatcaaacaagtttgc
atgcgagtcatgcaagaacagctggcccagttagccgctagtttaaggaggcctgagtca
ggtgtggctggcttacctggaaaaccgggacttccaggacctcctggggcaccgggagac
aacggcttccctgggcagtctggaacaagaggcctccccggactcaaagggccgccagga
gttatcggagtcaaaggacctaaaggtgaaatgggagacagaggctccagagggcccact
gcgagaggacccaaaggtcagccaggatctcctggacttcctggtgagccaggcaaaccc
ggctatggtcgggatggtcgggacgggcagaggggacctcctggttctcacggacaggcc
ggcgtacctgggcctcctggatcagctggtcctaatggttactgtgatccgtcagcctgc
aacctccaggcgggagctgcccaccagtctctggatgtgaagggacctgcagggaactaa
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