Semicossyphus pulcher (California sheephead): 138594500
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Entry
138594500 CDS
T10596
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138594500 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138594500 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138594500 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
spul00535
]
138594500 (col9a1a)
Proteoglycans [BR:
spul00535
]
Extracellular matrix (ECM) proteoglycans
Others
138594500 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138594500
NCBI-ProteinID:
XP_069521713
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MALSTMCRESLLVILLQIVLICSAQRGPVGPRGPAGPPGVAGVPGVDGIDGDRGVDSTVN
GGPGADGDNGKDGAAGAAGLPGADGPVGPPGDPGTVGLQGPKGDPGARGPQGEPGVGPDG
LDGLPGTDGLPGELGKVGAPGARGKRGPVGLPGVAGPRGPPGVYQGEDLCPNACPSGLHG
HSGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGILGDVGAQGLPGPGGARGLPGILGSKG
DRGPRGKPGDVGPLGIQGGPGDRGQRGAIGELGPAGVQGDVGPPGIRGVPGPKGEAGLPG
PDGREGIPGLPASKGLPGKSGAPGDAGPQGLPGVPGAYGQKGHGGVNGVTGDPGVVGLMG
SPGKQGERGEQGEAGPVGPRGGPGERGERGHLGPAGLPGGRGGKGDPGLPGLPGPAGYRG
QKGDRGAVGLDGPKGEQGGAGAEGTPGEGGDLGDQGEPGEKGATGPPGETGNKGPEGSRG
QQGKEGKEGQPGPRGMQGDMGVPGLPGGQGASGKSPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGIAGLPGPPGPPGPPGSTGENGFPGHTGSRGLPGLKGPAGVMGRKGPRGDQGDKG
DRGPTARGPKGDSGAPGLPGNPGRADYGKDGRDGERGPRGVPGAVGVPGPPGTPGLNGYC
ESSQCILPMVASPVSAKDSGMKGPSDM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccacgatgtgtcgagagtctctgctggtgattttactgcaaatcgtgctg
atttgctccgctcagaggggcccggtcggtcccagaggccccgcagggccaccaggagta
gccggcgtccccggagtggacggcatcgatggcgacagaggagtagactccacagtgaac
ggcggaccaggggctgatggtgataacggcaaagacggagctgctggagctgcaggactt
cccggcgcagatggacctgttggacctccaggagatcctggcaccgtgggcctacaggga
ccaaaaggagatccaggagcacgtggacctcagggggagcctggtgtcggacctgacggg
cttgacggtcttccaggtacagacgggctcccaggtgaactgggcaaagttggagcacct
ggagcgagaggaaagagaggtccagtgggtctacctggtgttgcagggccgcggggtcct
ccaggcgtgtatcagggcgaggacctgtgtcccaacgcctgcccctccggtctgcacgga
cactctggtctccccggcatgaaaggccacaaaggagttaagggtgaatctggtgagcct
ggaagacaaggacacaagggcgaggagggcgaccaaggaattctgggtgacgtcggagct
caaggcctaccaggtccaggtggagcaagaggcctcccaggaatacttggctccaaaggg
gacaggggacctcgagggaaacctggtgacgtcggtcctctgggaatccagggaggtcca
ggagatcgcggccaaagaggagccatcggtgagctcggcccagcaggagtgcagggggac
gtcggcccacctggaatcagaggagtaccagggccgaaaggagaggctggccttcctggt
ccagacggccgtgagggaatacccggacttcctgcctcaaagggtcttccaggaaaaagt
ggggctccaggtgatgccggcccacaaggacttcctggtgtgccaggagcttatggacaa
aaaggccatggtggtgtaaatggcgtcacaggtgatccaggtgtggtaggactgatgggg
tctccagggaaacaaggcgagcgtggcgagcagggagaggcggggcctgtcggacccaga
ggaggaccaggtgaacgaggagagcgaggacatctggggcctgcaggattaccgggaggc
aggggaggcaaaggggatccaggccttccaggacttcctggtcctgctggttatcgtggc
cagaagggcgacaggggtgcagtcggtctcgatggtccaaaaggagagcagggaggtgcc
ggagctgaaggaacgccaggagagggcggagacctgggagatcaaggagagccaggggag
aaaggagcgacaggcccaccgggggagacgggaaacaaaggacccgagggcagccgaggg
cagcagggcaaagagggcaaagagggccagccgggaccccgaggcatgcagggcgacatg
ggggtaccaggcctgccgggggggcagggagcatcggggaagtcaccaacagacacacac
atcaaacaagtctgcatgagggtaatgcaagagcagctggcccagctagcagctagcctg
agccgaccggagtcgggcatcgccggactaccgggcccccccggcccacctggacctcca
ggatccaccggagagaacggtttccccggacacaccggatcacggggactgcctggtctg
aaagggccagccggggtgatgggtcgcaaaggacctagaggtgatcagggtgacaaaggg
gacagaggccccacagccagaggacccaaaggagactcaggtgcccccggtctgccaggt
aatcccggtcgtgcagattacggtaaagacggccgtgacggagagcgaggaccccgcggc
gttcccggagcagtgggcgttcccgggcctcccggcacccccggtctgaacgggtactgt
gagtcgtcacagtgcatcctgcccatggtggcgtcgccggtttctgcaaaggactccggc
atgaagggcccaagtgacatgtga
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