Semicossyphus pulcher (California sheephead): 138600416
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Entry
138600416 CDS
T10596
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04382
Cornified envelope formation
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04518
Integrin signaling
spul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138600416 (col4a5)
04518 Integrin signaling
138600416 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138600416 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138600416 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138600416 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spul04147
]
138600416 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138600416 (col4a5)
Exosome [BR:
spul04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138600416 (col4a5)
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138600416 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138600416
NCBI-ProteinID:
XP_069527939
LinkDB
All DBs
Position
Unknown
AA seq
1682 aa
AA seq
DB search
MNKDLKSLRQLAVPLLFLALCVAVQRSDSAACHGCVGSKCDCSGQKGTKGERGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGPLGLGGPKGIRGPSGLPGFPGTPGLPGLPGQDGAPGP
RGVPGCNGTKGERGYPGSGGIPGQQGLSGPPGLPGPKGDPGDVISTNRFGEKGSVGLPGL
PGVPGTSGPPGLQGPLGPPGPRGYEGRPGPPGLPGPKGNMGLNFQGPKGEKGDPGLPGPP
GPPGQVGEQKRPPETEIQRGDKGDPGHPGPPGDPGYPGPPGQSGGQKGDKGEPGEAGKRG
KPGKDGDPGSSGFPGIKGESGLPGPPGRDGERGLKGDRGYAGPPGVVVGGHTGGRVGPKG
EPGFPGNPGLKGDRGQPGLSGPQGQPGLPAIGGGGQPGAPGFPGERGQKGDPGPPGLSLP
GPPGRSGAPGSQGQPGLPGPPGFSTAGQNCVAGDPGRPGLQGERGYPGETGQKGDKGDTC
VNCFGGTSGIPGPQGPPGQPGFPGSPGGPGIKGDRGYPGTPGSVGPPGSSGPQGSPGFPG
EKGDPGDAVTVSGVRGEKGDSGFPGPPGLPGLDGRPGRDGQPGSSGPKGAPGSLLVKGER
GLPGEPGGPGIPGDRGPPGAPGFGPQGPSGEKGIPGVPGRSGGPGAPGAKGEPGLSVAEK
GLPGARGLDGEPGLPGSSGSPGQPGQNGFPGLPGAKGDPGLPGIGLPGPPGVKGFPGIPG
QPGATAGPGRPGVDGLPGQPGFPGPKGEPGFGLPGPAGLPGAPGGKGFPGPKGDPGFPGG
PGSPGRSGFDGGPGTKGEPGIPGIPGARGPPGSPTIGSLGQPGAPGGPGPMGPPGFPGSN
GEKGDPGPPGLDIPGLPGDRGSPGFPGSPGAVGTPGPPGGPGRDGLPGLPGQKGDMGSMG
TPGPSGGPGGPGGPGATGLKGEPGFPGRDGSPGGPGGKGERGELGLQGPPGTSLPPSVTK
GAKGDPGLPGAPGFPGQKGIPGLSGDPGLSGSDGRPGLPGPPGPKGDPGIPGGSGGPGGP
GAKGSMGEMGFPGPSGQKGLPGQPGRSGSPGQPGGPGFPGSKGEPGSAGVGPPGQSGVKG
EPGQPGFPGSPGQKGTPGGPGGPGIPGGPGVKGDPGLPGFQGSPGIPGPKGLDGGPGAPG
LTGAPGRPGESGRPGGPGGPGEKGQAGRDGIPGPAGVKGEPGLPGYGGPGASGLPGLPGT
KGDPGLPGPSGSPGFPGTKGEAGFPGSPGPPGNGGPAGAPGLALQGPKGLQGPPGPPGRS
GGPGPEGPRGPPGSGGIRGEKGIAGSPGQPGFPGQKGDSGVPGFPGPSGLPGGPGVKGDI
GLPGVPGFPGSKGDSGLPGGSGLPGDPGDIGSTGPPGDPGVPPTPIVVKGERGPPGPQGL
IGGRGLPGSPGRDGLPGQAGEPGDSGLEGPPGFSGPPGRKGDNGPGGQPGQRGYPGPPGS
DGPQGPPGLPGSVSAAHGFLITRHSQGQDVPFCPEGTSPIYDGYSLLYVQGNERAHGQDL
GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEGIKPYISR
CAVCEAPAMVIAVHSQTIQIPTCPSNWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVVCMK
RT
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagctcgccgtgccgctgctcttcctcgccctg
tgcgtcgcggtgcagcgatccgactctgcggcgtgccacggctgtgtgggatccaaatgt
gactgcagcggacaaaaaggcaccaagggtgaacggggtttcccaggtctcaccggacag
ccaggggtcccaggattccccggaccagaggggccgatcgggcccagaggagagaagggc
agcgatgggcctctaggactaggtggtcccaaaggaataagagggccgtctgggcttcca
ggatttccaggaactccaggacttccaggtctccccggacaagacggcgccccaggaccg
agaggagtgccgggctgcaacgggacaaagggtgagaggggttacccaggaagcggagga
atccccggacagcagggactgtcgggtccacctggtctgccaggaccaaagggagacccc
ggtgatgtgatctccaccaaccgctttggagagaaaggatcagtgggtctgcccgggtta
ccaggagttcctggaacttctggaccccccggtttgcagggtccactcggcccaccagga
cccagaggctatgagggtcgtccaggtcctcctggtctccccggaccaaagggaaacatg
ggactgaacttccaaggacccaaaggagagaagggtgacccaggtctccctggacctcct
ggtcctcccgggcaggtgggagagcagaagagaccccctgagacagagatccagagagga
gacaagggtgatccaggtcatccaggtcctccaggtgatccgggctacccaggaccccct
ggtcaatctggtggacagaaaggagacaaaggagaaccaggagaagcaggcaaacgaggc
aaaccaggcaaagatggcgacccaggttcttcaggcttccctggaatcaaaggagagtcc
ggcctgccaggtcctcccggcagggatggagagagaggacttaaaggtgatcgtggatac
gcaggacccccaggagtggtggttggcgggcacacaggaggtcgggtcggtcctaaaggt
gagcctggattccccggaaaccctggacttaaaggagacagaggacaaccaggcctctca
ggacctcagggacaaccaggacttccagctattggcggtggtggtcagcctggagctccg
ggcttccccggagagaggggtcagaagggagaccccggtcctccagggctgtctctgcca
ggtcctccaggacgttcaggagctcccggttctcagggtcaaccaggactccctggacct
ccaggcttttccacagcgggacaaaactgtgttgcaggagaccctgggcgtcccggtctg
cagggagagagaggttacccaggagagacggggcagaaaggtgataagggcgacacctgt
gtgaactgctttggcggtaccagtggcatcccaggaccccaaggacctccaggacagcct
ggatttcccggatctcctggtggcccaggtatcaaaggagacagaggctatccaggaacc
cctggttctgttggaccccctggttcatccggtcctcaaggttctcccggcttccccgga
gagaagggagacccaggcgatgctgtcacagtcagtggggtgaggggagagaagggtgac
agcggcttccccggtccacctggtcttcccggtcttgacggtcgacccggtcgtgatgga
cagcctggatcttctggacccaaaggagctcctggctccctgctggtgaaaggagaacga
gggctccccggagagccaggtggcccaggtattccaggagacaggggtcctccaggagcc
cctggttttggacctcagggaccctctggagagaaaggcatcccaggagtcccaggaaga
tccggaggtcctggtgcacctggtgcgaagggagaaccaggcctgtcagtggctgagaaa
ggcttaccaggagcaagaggactggatggcgagccaggactgcctggatcatcaggtagc
ccaggtcagcccggacagaacgggttccctggtttaccaggagcgaagggtgaccctgga
ctcccaggcatcggactcccaggaccacctggcgttaaaggattcccaggtatccccgga
cagccaggagctactgcagggccaggaagaccaggtgtagatggactcccaggccagcct
ggatttcctggaccgaagggtgagcctggctttggccttcctggccccgcaggtttacca
ggagcacctggaggtaaaggtttccctggaccaaagggagatcctggtttccccggcggt
cctggttcacctggacgatccggattcgatggcggtccaggaactaaaggtgagcctggt
atacctggtattcctggcgctcgtggcccacctggatcccccactattggctcactgggt
caaccgggagcccctggaggccctggaccaatgggaccgccaggattccccggttcaaat
ggagagaagggagacccaggccctccaggtctggacatccccggcctgccaggagacagg
ggttctcccggtttcccaggttccccaggagcagtcggaactccaggacctcctggagga
cctggacgcgatggcctgcctgggctgccaggtcagaaaggagacatgggttcaatggga
actccaggaccttctggaggaccaggaggcccaggagggcctggcgctactggacttaag
ggtgaacctggattcccaggcagagatggctctcccggcggtcccggtggtaaaggagag
agaggcgaactcggcctccagggaccccccggaaccagcctgcccccatcagtcacaaag
ggagccaaaggagatcctggactaccaggtgcaccaggatttccaggtcaaaaaggtatc
ccaggtctctctggtgaccccggtctgtcaggatcagatggacgccctggacttcccgga
ccaccaggtcctaaaggagatcctggcatcccaggaggctccggtggtcctggaggtcca
ggagctaagggcagcatgggagaaatgggattcccaggaccatcaggacagaagggtcta
ccaggtcagccaggtaggtctggatccccaggacagccaggaggacctggtttccccgga
tctaaaggtgaaccaggctctgctggggttggaccacctggacaatctggagtcaagggt
gaaccaggccagcctgggttcccaggaagtccaggacagaaaggaactccaggagggccc
ggtggcccaggtataccaggagggccaggcgtcaaaggcgaccccggccttccaggattc
caaggttcacctggtatccccggtcccaagggtctcgatggtggaccaggtgccccaggt
ctcacaggagctcccggtagaccaggagagtctggccgaccaggagggccaggagggcca
ggagagaagggtcaggcaggtcgggacgggatccctggaccagctggagtcaaaggagag
ccaggacttcctggttatggtggtcccggtgcctctgggcttccagggttgccaggcaca
aagggtgacccaggtctccccggcccatctggcagtcccggtttccctggcactaaagga
gaggctggtttccctgggtctcctggtcctccaggcaacggcggccctgctggggctcca
ggactggctctgcagggccccaaagggctccaaggaccccctggaccacctggaagatca
ggtggacctggcccagaaggtccccgcgggcccccaggaagcggcggcattaggggagag
aagggtattgccggctctccaggccagccaggcttccccggacagaaaggagactctggt
gttcctgggttcccgggtccctcgggtcttcccggtggtccaggtgtgaagggagacatc
ggtctgcctggcgtgcccggattccctggatcaaagggtgactcaggactccccggtggc
agtgggcttcctggagatcctggagatattggatccactggacctcctggtgaccctggt
gtacctccaactcccattgtggtgaaaggagagaggggaccccctggtcctcagggcctg
attggtggtcggggactacctggttctcctgggcgtgacggacttccaggccaagctggt
gaacctggagattctggtctcgagggtcctcctgggtttagcggcccacctggcaggaag
ggagacaatggacccggcggtcagcctggtcagcgtggctaccctggtcctcctggttca
gatggtccacagggtcctcctggtcttccaggatcagtatccgcagctcatggcttcctc
atcaccagacacagccagggtcaggacgtacccttctgtcccgaaggaactagccccatc
tatgatggctactccctgctgtacgtgcagggcaacgagagggcgcacggacaggacctt
ggcacggctggcagctgtctgcgcaggttcagcaccatgcccttcatgttctgcaacatt
aacaacgtgtgcaacttcgcctcccgcaacgactactcctactggctgtccacgcctgag
cccatgcccatgtccatggcccccatcacaggagagggcattaagccttacatcagcagg
tgtgcggtgtgtgaagctccagccatggtgattgcagttcacagtcagaccatccagatt
cccacttgcccttcgaattgggaagccctgtggatcggatactccttcatgatgcacact
agtgcaggcgcagagggctccggtcaggctctggcctcccccggctcctgcctggaggag
ttccgcagcgctcccttcatcgagtgccacggtagagggacgtgcaactactacggcaac
tcctacagcttctggctggccactgtagaaccctctgagatgttcaggaagccgcaatcg
gagactctcaaggcaggtaacctacgaacacgcgtcagccgctgcgtagtctgcatgaag
aggacgtaa
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integrated database retrieval system
