Semicossyphus pulcher (California sheephead): 138609257
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Entry
138609257 CDS
T10596
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138609257
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138609257
09142 Cell motility
04820 Cytoskeleton in muscle cells
138609257
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
spul00535
]
138609257
Proteoglycans [BR:
spul00535
]
Extracellular matrix (ECM) proteoglycans
Others
138609257
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
138609257
NCBI-ProteinID:
XP_069537995
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MSAYSPLCLALLSLLLAPALGQLDLNRLDGDTVCPPMRSGQDDLPGFDLITQFQLDVIPL
KGVRKVDGSTQLQVAYRLDREANFQIPTMLNFPRGFPDEYSFMVTFRMIKNTVSKVWNVW
QVVDEDGNKQAGLRLNGDQQALEYFLMGADGNLQTVTFPGLSVLFNTKWHKVMIGVERDQ
VTLYVDCQPVDQKPIKGKGPINTEGDTLIGRLDADPDASVVFELQWMLIHCDPKRAQRES
CNELPATEMYANAEPDKSLQGPPGAPGPEGPRGPSGENGRDGRDGLPGSPGSPGTPGSKG
EQGEIGLPGQRGLPGLPGSAGSSGPMGPRGPVGERGLPGFPGPAGPPGPASEGPAGPPGK
PGIPGDEGNIGPEGAPGPRGGPGIAGLPGPPGPPGPVGPPGASNEGSGEACPAACPAGPQ
GLAGLPGMKGHKGTDGEPGKDGISGDKGDAGAQGPQGPPGRMGDDGQRGPIGFPGTLGEK
GDKGPPGFNGVPGPTGPPGAPGVEGVRGRQGLEGPKGDDGAVGPQGEQGPAGEKGEVGEP
GADGLDGLPGVDGAKGEAGTPGAVGIRGIVGIPGLPGKQGVAGPPGAQGDAGAEGAIGPV
GLPGKTGEPGTDGEDGKPGDKGATGGTGKQGPVGPAGPPGIQGDKGDKGDTGAKGMKGHT
GYKGDQGPMGPEGPKGSLGDTGVAGDIGVKGDQGPPGVPGIKGERGEKGTRGATGDEGRP
GQPGHEGLAGPMGARGLEGEPGLPGASGPRGLPGPKVNDEKLREMCSAVVEEQLAEFMKE
LLKRPAAIGAPGTAGPAGPPGPPGAAGAAGAAGTPGAKGPKGHPGFFGLPGAPGKNGDAG
EKGDKGDKGEDGVGIKGSPGAPGAPGAVGAPGIGKDGKNGERGETGNPGAPGAAGPRGPS
GPPGLCDPSTCINRLPLYMVSGKKSAGYKN
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcctactctcctctctgtttggctctgctgtccctcctcctcgctccagcactg
ggacaactagacctcaaccgattggatggtgataccgtctgcccaccaatgagaagtgga
caagatgaccttccaggttttgatctgatcacccagttccagctggatgtgatccctctg
aaaggcgtgaggaaggtggatggctccactcagctccaggtggcctaccgcctcgaccgc
gaggcaaacttccaaattccgaccatgctgaactttcctcgtggcttccctgacgagtac
tccttcatggtgaccttccgcatgatcaagaacaccgtgagcaaggtgtggaatgtctgg
caagtagtggacgaagacggaaataaacaagccggactgagactgaatggtgaccagcag
gctctggagtacttcctgatgggggctgacggcaacctgcagactgtcaccttccctggc
ctttctgtgctcttcaacaccaagtggcacaaagtgatgattggagtggagcgtgaccag
gtcactctatacgtggactgccagcctgtggatcagaaacccattaagggcaaaggcccc
atcaacacagagggagacactctcattggcaggctggatgctgatcccgacgcctccgta
gtgtttgaactccagtggatgttgattcactgtgacccaaagagagcccagagagagagc
tgcaacgagttgcctgccaccgagatgtatgccaatgctgagcctgacaagtcactccaa
ggtcccccaggagcccctggcccagagggcccccgaggcccctcaggagaaaacggcaga
gatggaagagatggtcttccaggttctcctggcagtccaggcactcctggcagcaaaggg
gagcagggagagatcggtcttcctggacagagaggcctgcccggccttcctggatctgct
ggttcatctggcccaatgggtccaagagggcctgtgggagagagaggacttcctggcttt
cctggacctgcaggtcctcctggcccagcaagtgaaggacccgctggaccgccaggaaaa
cccggaatcccaggagatgagggaaacatcggacctgagggtgcacctggacccagaggg
ggaccaggcatcgcagggcttcctggccctcctggtccaccagggcctgtgggaccgcct
ggtgccagcaatgagggaagtggggaagcttgtcctgctgcctgtcctgctggaccccag
ggactggctggattaccagggatgaagggacacaaaggtacagatggtgagcctggaaaa
gacggaatatctggagataagggagacgcaggagcacaaggtccccaggggcctccaggt
cgcatgggagatgatgggcaaagagggcccattggattccctggaaccctgggagaaaag
ggagacaaaggtccacctggattcaatggcgtcccaggaccaaccggccccccaggagcc
cctggtgtggagggagtccgtggacgtcagggtttggagggtcctaagggtgacgatgga
gctgtgggacctcaaggagagcagggccctgcgggggagaaaggagaagttggagagcct
ggcgccgacggcttggatggacttcctggagttgatggagcaaagggagaggctggtact
cctggagctgttggtatcagggggattgtgggtattccagggctgccaggaaagcaggga
gtagctggaccccctggtgcacagggcgatgctggtgctgagggagccatcgggccagtc
ggacttcctggaaagactggtgagcctggaacagacggagaagatgggaaaccaggagac
aaaggagcaactggtggaacaggaaaacaaggacctgtggggcctgcaggacctccaggc
atccagggtgacaaaggtgataaaggtgacactggcgccaaaggaatgaaaggtcacact
ggatacaaaggtgatcagggacctatgggaccagagggaccaaaaggaagtctgggagac
acaggtgttgcaggagacattggagtcaaaggggaccagggccctcctggtgttcctgga
atcaaaggagagcgtggagagaagggcacgagaggagctacaggagatgaaggcagacca
ggccagccggggcacgagggtttggctggtccaatgggagctcgaggactggagggagaa
ccaggccttcctggagcatcaggacccagaggtctacctggcccgaaagttaatgatgag
aagctccgtgagatgtgctcagctgttgttgaagaacaattagcagaatttatgaaagag
ttactgaagaggccagctgccattggtgcccctggtactgctggacctgcaggcccaccc
ggccctcctggagcagctggagcggccggagcagcggggaccccaggggcgaagggtccc
aaaggccacccaggcttctttggacttccaggcgcaccaggaaagaatggtgatgccggg
gagaagggagacaagggagacaagggagaggacggtgtcggaatcaaaggaagcccaggc
gcaccaggggcaccaggtgcagtaggcgctcctggcatcggcaaggatggcaaaaatgga
gaacgtggtgagacaggaaatcccggtgccccaggagcagccggtcccaggggaccctca
gggccgcccgggctttgtgatccatcaacctgtattaacagacttcctctctatatggtc
agcggaaagaagtctgctggatacaaaaactaa
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