Streptomyces fodineus: BFF78_28015
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Entry
BFF78_28015 CDS
T05140
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spun
Streptomyces fodineus
Pathway
spun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFF78_28015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spun03019
]
BFF78_28015
03009 Ribosome biogenesis [BR:
spun03009
]
BFF78_28015
Enzymes [BR:
spun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BFF78_28015
Messenger RNA biogenesis [BR:
spun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFF78_28015
Ribosome biogenesis [BR:
spun03009
]
Prokaryotic type
rRNA processing factors
BFF78_28015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AOR37368
UniProt:
A0A1D7YP70
LinkDB
All DBs
Position
6539441..6543664
Genome browser
AA seq
1407 aa
AA seq
DB search
MPAIPAAESDEVAEAIAAEEALEAVESAEAAETEEVAEAAPAPAAEEEAPAGRPRRRATR
RASAPAGTPPTAEAVETVVPAVAETGQPAAVAEGGEVVVGEEAAPRRVRRRATRSVSAPT
GAASDAVSGAEEAPAATEAAVTEEATVTEQAAETAPAARPRRRATRRASAPAGAPAPAEA
TETVVPAAAESGTAAAVEADKAQEQPAATEEVPEEAAPAARTRRRATRRASAPTGAPKAA
ESAAEIPAAAESAAAEAPAAAAEAAAPAEAGGDVEEAAARRTRRRATRRASAPAGEPKAA
DSAAAKAPAEAEKPAAEAAAEARTPEEPVTTHTTEPAPAEEPAPRRSRRRAVRPVFGFAE
AAQPAQAAEAEAAPEAEAPRRPARPAVAVFQAPVFAEPKFQTPERAAAEAAAEAVEEEPE
EYAEERAEAGARRRRRRRGAAAEETRAVEGEETAESAEAVAEEPEEAEEAEEAEEAEGAE
GFEEAGARRRRRRGGRRRRRGDAAEGEAGEGADAEAEELAAEQAAQDAEDTAEQEEEDAE
EAHDESAGSTSGSRRRRRRRRRAGDTSADNEPGEGDPERTVVKVREPRKPAEPSDEVQSI
KGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHGERTQIGVLEDG
VLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMAN
GPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDT
ERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKNGNAPTLL
YGEPDMTVRVVRDIFNEDFSKVVVSGDDAWETIHGYVSHVAPDLAGRLSKWTSEVDAFAT
YRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAA
EEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQM
TRKRVGQGLLESFSETCVHCNGRGVIVHMEQPAAAGGGGGKRKKRGRGGEAPEHVHETAA
VAVETGEAVEPEVETAAEVAAEIAEPVTLPAPDFAPDEELYSSVAEAEAAATRGRTRRRA
SRRASAPAGAPKAEAPREKAPRAKAAAAAEAPTAQHVTAEEAAARPVRPEPAAEALAVPT
AVEDQMVPAPQAEAVEEAAPQGRTRRRATRKVSAPAGSPAGAEATVVTVPETAPAAEAPV
AQPAVEAPAAQAPAAAAVEEAPEPAAPARPRRRAVRKVGTPTATAEAAVVVVPSVPSEEA
PAAEEVVAAEAPAAEEAAPAKKAARKTAKKATAKKAAAKKTVAKKAVAKKTAAKKTTAKK
AAKTAAAKSTAKKTTTVSAAADVADEG
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
ctgccggccataccggccgcggagtccgacgaggtcgccgaggccattgcggccgaggag
gcgcttgaggcagtcgagagcgctgaggccgccgagaccgaagaggtcgccgaggctgcc
ccggcgccggccgccgaggaggaggctcccgccggccgtccgcgccgccgggccacccgc
cgcgcctccgcgcccgcggggacgccgcctaccgccgaggccgtcgagaccgtggtcccg
gccgtggccgagaccgggcagcccgctgccgtcgccgagggcggcgaggtcgtcgtgggg
gaggaggccgcgccgcgccgcgtgcgccgccgtgccacgcgcagcgtctccgcgccgacc
ggtgccgcttcggatgccgtttccggcgccgaggaagcgcctgcagccactgaggctgcc
gtgactgaggaggcaaccgtgacggagcaggccgccgagaccgcgcccgccgcccgtccg
cgccgccgggccacgcgtcgtgcgtccgcacccgccggtgcccccgcgcccgccgaagcc
accgagacggtggttccggccgccgccgagtccggcacggccgctgccgtcgaggccgac
aaggcccaggagcagcccgccgccacggaagaggtcccggaggaagccgcgcccgccgct
cgtacgcgccgtcgcgcgacccgccgcgcctccgcgcccaccggtgcgccgaaggcggcc
gagtccgccgcggagattccggccgccgccgagtccgctgccgccgaagccccggccgcc
gctgccgaagccgccgcccctgccgaggcgggcggtgacgtcgaggaggccgctgcgcgt
cgtacccgccgccgggccacccgccgcgcctccgcgcccgccggtgagccgaaggccgcc
gactccgccgctgcaaaggccccggccgaggccgagaagcccgctgccgaggctgctgcc
gaggcgcgcaccccggaggaacccgtcaccacgcacaccaccgagcccgcccccgccgag
gagcccgccccccgccgctcccggcgccgggccgtgcgccccgtcttcgggttcgccgag
gccgcacagcccgcgcaggccgccgaggccgaggcggcccccgaggccgaggccccgcgt
cggcccgctcgcccggccgtcgctgtcttccaggcgccggtgttcgccgagccgaagttc
cagaccccggagcgcgccgccgccgaggccgcggcggaggccgtcgaggaggagcccgag
gagtacgcggaggagcgtgccgaggccggtgcgcgccgtcgccgtcgccgccggggcgcc
gccgcggaggagacgcgcgccgtcgagggcgaggagaccgccgagtccgccgaggccgtt
gctgaagagccggaagaggcggaagaggccgaggaggccgaagaggcggagggcgccgag
ggcttcgaggaggccggtgcgcgccgccgtcgccgtcggggcggccggcgccgccgccgc
ggtgacgccgccgagggcgaggccggtgagggcgcggacgccgaggccgaggaactggcc
gccgagcaggccgcgcaggacgccgaggacaccgccgagcaggaggaagaggacgccgag
gaggcccacgacgagagcgccggttccacctccggcagccgccgtcgccgccgtcgccgg
cgccgggccggtgacacctccgccgacaacgagcccggcgagggtgaccccgagcgcacg
gtcgtcaaggtccgcgagccccgcaagcccgccgagccctccgacgaggtgcagtccatc
aagggctcgacccgtctggaggccaagaagcagcgccgccgggaaggccgtgagcagggc
cgccggcgcgttccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgag
cgcgtgatggtcgtgcgccagcacggcgagcgcacgcagatcggcgtcctcgaggacggc
gtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtacgtcggcaatgtctac
ctgggcaaggtccagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaag
ggccgcaacgccgttctgtacgccggtgaggtcaacttcgaggcgctgggcatggccaac
ggcccgcgtcgtatcgagtcggcgctcaagtccggccagtccgtgctcgtccaggtcacc
aaggacccgatcgggcacaagggcgcgcgtctgaccagccaggtctccctgccgggccgc
tacctcgtgtacgtccccgagggctccatgaccggcatcagccgcaagctgcccgacacc
gagcgggctcggctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatc
gtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgggacgtcgagcggctg
caggcgcagtgggaggacatccagaagaagtcgaagaacggcaacgccccgacgctgctg
tacggcgagccggacatgaccgtccgggtcgtgcgcgacatcttcaacgaggacttctcc
aaggtcgtcgtcagcggtgacgacgcctgggagacgatccacgggtacgtctcgcacgtc
gcgccggacctggccggccggctgtcgaagtggacctccgaggtcgacgccttcgccacc
taccggatcgacgagcagctcgccaaggcgctggaccgcaaggtctggctgcccagcggc
ggttcgctggtcatcgaccggaccgaggcgatggtcgtcgtcgacgtcaacaccggcaag
ttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctggaggcggcc
gaggagatcgtgcgccagctccggctgcgcgacctcggcggcatcatcgtgatcgacttc
atcgacatggtcctggagtccaaccgcgacctggtgctgcgccgcctgctggagtgcctg
ggccgcgaccgtacgaagcaccaggtggccgaggtgacctcgctgggcctggtgcagatg
acccgtaagcgggtcggccagggcctgctggagtccttctccgagacctgcgtccactgc
aacggccgcggtgtcatcgtgcacatggagcagccggcggccgccggaggcggtggcggc
aagcgcaagaagcgcggccggggcggcgaggcgcccgagcacgtgcacgagaccgccgcc
gtggccgtggagaccggcgaggccgtcgagcccgaggtggagaccgccgccgaggtggcc
gccgagatcgccgagccggtcacgctgccggcccccgacttcgcgccggacgaggagctg
tacagcagcgtcgccgaggcggaggcggcggccacccgtggccgtacgcgccgccgggcg
agccgccgggcctcggctccggcgggtgcgccgaaggcggaggctccccgcgagaaggcc
ccgagggccaaggccgccgcggctgcggaggcgccgaccgcccagcacgtcaccgccgag
gaggcggcggcacgcccggtgcgtccggagccggctgccgaggcgctggccgtgcccacg
gccgtcgaggaccagatggtcccggcgccgcaggccgaggccgtcgaggaggccgcgccg
cagggccgtacgcgccgtcgtgcgacccggaaggtgtcggcgccggccggttccccggcg
ggtgcggaggcgaccgtggtgacggtgccggagaccgcgcccgcggccgaggcaccggtg
gcacagcccgccgtcgaggcgccagccgcgcaggccccggcagcggccgccgtcgaggag
gcgcccgagcccgccgccccggcccgcccgcgccggcgtgccgtgcgcaaggtcggcacg
ccgaccgccaccgcggaggcggccgtcgtggtcgtcccgtcggtcccctctgaggaggcc
ccggctgccgaggaggtcgtggcggcggaggccccggctgccgaggaggccgctccggcc
aagaaggcggcccgcaagaccgccaagaaggccacggcgaagaaggccgccgccaagaag
accgtggcgaagaaggccgtcgccaagaagacggccgccaagaagaccacggccaagaag
gcggccaagacggccgccgcgaagtccacggcgaagaagaccaccacggtctccgccgcc
gcggacgtggccgacgagggctga
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