Sphingobium sp. WTD-1: N6H05_05745
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Entry
N6H05_05745 CDS
T10837
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
spwt Sphingobium sp. WTD-1
Pathway
spwt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N6H05_05745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spwt03021
]
N6H05_05745
03400 DNA repair and recombination proteins [BR:
spwt03400
]
N6H05_05745
Enzymes [BR:
spwt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N6H05_05745
Transcription machinery [BR:
spwt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N6H05_05745
DNA repair and recombination proteins [BR:
spwt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N6H05_05745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
WIA57302
LinkDB
All DBs
Position
complement(1167877..1168938)
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AA seq
353 aa
AA seq
DB search
MTVNMKNWQELKKPNALEIKPTGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNIKQVALKMEGEGPKRLQLSATGPAVVKAGDI
AVVGDIEVMNPDLVICHLDQGATLNMELTADIGKGYVPAVANRPADAPIGLIPVDALYSP
VRQVAYKVDNTRVGQELDYDKLSLTLETDGTVTPEDAIAYAARILQDQLQLFVHFEDALP
AAAPAAGHAAAAASEGESDTNQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTE
AEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatgaagaactggcaggaattgaagaagcccaacgccctcgagatcaag
ccgaccggcgacggcaagcgcaaggcgaccttcgttgccgaaccgcttgagcgcggtttt
ggcctgacgctcggcaacgcgctgcgccgggttcttctctcctcgctccagggcgcggcg
gtcacctcgatcaagatcgagaatgtcctgcacgaattctcgtcgctcgccggtgtgcgt
gaagacgtcaccgacatcgtcctgaacatcaagcaggtcgcgctgaagatggaaggcgaa
ggccccaagcgtctgcagctgtccgccaccggcccggccgtggtgaaggcaggcgacatt
gccgtcgtcggcgacatcgaagtgatgaaccccgatctggtgatctgtcacctcgatcag
ggcgcgacgctgaacatggaactgacggctgacatcggcaagggctatgtccccgccgtc
gccaaccgcccggcagacgcaccgatcggcctgatcccggtcgacgcgctctactcgccg
gtccgccaggtcgcctacaaggtggataacacccgcgtcggccaggaactggactatgac
aagctgtcgctgacgctggaaaccgacggcaccgtgacgccggaagatgcgattgcctat
gcagcccgcatcctgcaggaccagctccagctgttcgtccacttcgaggacgcgctgccc
gccgctgccccggctgccggccatgccgctgccgctgcgtcggaaggcgaaagcgacacc
aaccagatcaaccgctatctgctcaagaaggtggacgaactggaactgtcggtccgctcg
gccaactgcctcaagaacgacaacatcatctatatcggcgatctggtccagaagaccgaa
gccgagatgctgcgcaccccgaatttcggccgcaagtcgctgaacgaaatcaaggaagtg
ctgtcgtccatgggcctgcgcctgggcatggacatccccggctggccgccggaaaatatc
gaggaaatggccaagaagctcgaacaggagctgctgggctaa
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