Entry |
|
Symbol |
uvrA
|
Name |
(GenBank) excinuclease ABC subunit UvrA
|
KO |
K03701 | excinuclease ABC subunit A |
|
Organism |
spwt Sphingobium sp. WTD-1
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:spwt00001]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N6H05_18575 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:spwt03400]
N6H05_18575 (uvrA)
DNA repair and recombination proteins [BR:spwt03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N6H05_18575 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N6H05_18575 (uvrA)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
3769299..3772214
|
AA seq |
971 aa
MSLTHISVRGAREHNLKGVDVDLPRDALIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIP
YSPATGEPISAQTVSQMVDRVMLLPEGTRFYLLAPVVRGRKGEYRKELAEWQKAGYTRVR
IDGELYLIEDAPALDKKYKHDIEVVVDRLAVNADMATRLADSFEQALKLADGLAFVDLAE
GVVPGREDEAQSAGKMKNAGIPANRIVFSEKFACPVSGFTIPEIEPRLFSFNAPMGACPA
CDGLGERQEFDPELVVPNEALSLKKGAVVPWAKSNPPSPYYMQVLGSLAKEFGFSLDTPW
AELPGEVKLIILHGTGGKPVTLRFVDGKKSYEVKKPFEGVIGNLNRRLLQTESAWMREEL
SKYQTAMPCETCHGARLKPEALAVKIAGEDISVSTRRSVVDALAFFTAMPDALNEQQNQI
ARAILKEIVERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEP
SIGLHQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTIVAQG
TLPELLAHKDSLTADYLNGTRRIEVPAKRRKGSGKKLTVHNARANNLTGVTASIPLGTFT
CITGVSGSGKSSFTIDTLYAASARTLNGARIVAGPHDKITGLEHCDKVIDIDQSPIGRTP
RSNPATYTGAFTNIRDWFAGLPEAQARGYKPGRFSFNVKGGRCEACQGDGVLKIEMHFLP
DVYVTCDVCHGARYNRETLEVKFKGMSIADVLDMTVEDAVEFFKAVPPIRDKMAMLAEVG
LGYIKVGQQATTLSGGEAQRVKLAKELSRRATGNTLYILDEPTTGLHFEDVRKLLEVLHA
LVEQGNSVVVIEHNLDVIKTADYIIDMGPEGGVKGGEVVAQGTPEQVVKEKRSFTGRYLA
PLLGLEAVAAE |
NT seq |
2916 nt +upstreamnt +downstreamnt
atgagtctgacccatatttcggtgcgcggcgcgcgcgagcataatctcaagggcgtggac
gtcgatctgccccgcgacgccctgatcgtcatcaccggcctttccggctcgggcaagtcc
agcctcgccttcgacaccatctatgccgaggggcagcgccgctatgtggagtcgctctcc
gcctatgcgcgccagttcctggagatgatgcagaagcccgatgtcgagcatatcgagggc
ctctcccccgcgatcagcatcgagcagaagaccaccagccgcaacccgcgctccaccgtc
gcgaccgtcaccgagatttacgactatatgcgcctgctctgggcgcgcgtcggcatcccc
tattcgcccgccaccggcgagccgatcagcgcgcagaccgtcagccagatggtcgaccgg
gtcatgctcctgcccgaaggcacccgcttctacctgctcgccccggtcgtgcgcgggcgg
aagggcgaatatcgcaaggaactggccgagtggcagaaggcgggctacacccgcgtccgc
atcgacggcgagctttacctgatcgaggacgcccccgccctcgacaagaaatacaagcat
gacatcgaggtcgtggtcgatcgcctggcggtcaatgccgacatggccacccgcctcgcc
gacagtttcgagcaggcgctcaagctcgccgacggcctcgcctttgtcgacctggccgag
ggcgtcgtccccggccgcgaggacgaagcccagtccgcgggcaagatgaagaatgccggc
atccccgccaaccgcatcgtcttttccgagaaattcgcctgcccggtcagcggcttcacc
attcccgagatcgagccgcgcctcttctccttcaacgcccccatgggcgcctgcccggcc
tgcgacggcctgggcgagcggcaggagttcgaccccgaactggtcgtccccaacgaagcc
ctctccctgaagaagggcgccgtcgtcccctgggccaagtccaacccgcccagcccctat
tatatgcaggtcttgggctccctcgccaaggagttcggcttctccctcgacaccccctgg
gccgagctgccgggcgaggtgaagctcatcatcctccacggcaccggcggcaagcccgtc
accctgcgcttcgtcgacggcaagaagagctacgaggtcaagaagccgttcgagggcgtg
atcggcaacctcaaccgccgcctgctccagaccgaaagcgcctggatgcgcgaggaactg
agcaagtaccagaccgccatgccctgcgagacctgccacggcgcgcgcctcaagcccgaa
gcgctggcggtcaagatcgccggcgaggacatctccgtctccacccgccgctcggtggtg
gacgcgctcgccttcttcaccgcgatgcccgacgcgctcaatgagcagcagaaccagatc
gcccgcgccatcctcaaggaaattgtcgagcgcctcggcttcctcaacaatgtcggcctc
gattatctgaacctcgaccgcacatcaggcacattgtcgggcggcgaaagccagcgcatc
cgcctcgccagccagatcggctcgggcctctcgggcgtgctctacgtcctcgacgaaccc
tcgatcggcctgcaccagcgcgacaatgaccggctgctcgtcaccctgaaacgcctaaga
gacctcggcaacagcgtcatcgtcgtcgagcatgatgaggatgcgatccgcgccgccgac
tatattgtcgatatggggccgggcgccggcgtccatggcggcaccatcgtcgcccagggc
accctgcccgaactcttggcgcacaaggacagcctgaccgcggactatctcaacggcacc
cgccgcatcgaagtcccggccaagcgccgcaagggctcgggcaagaagctcaccgtccac
aatgcccgcgccaacaacctcaccggcgtcaccgcgtcgatcccgctcggcaccttcacc
tgcatcaccggcgtcagcggatcgggcaagtccagcttcaccatcgacaccctctacgcc
gccagcgcccgcaccctcaacggtgcccgcatcgtcgccggcccgcatgacaagatcacg
ggcctggaacattgcgacaaggtgatcgacatcgaccagtcgccgatcggccgcaccccg
cgctccaacccggccacctataccggcgccttcaccaatatccgcgactggttcgcgggc
ctccccgaagcgcaggcgcgcggctacaagccgggccgcttctccttcaacgtcaagggc
ggccgctgcgaagcctgccagggcgacggcgtgctcaagatcgagatgcacttcctcccc
gacgtctatgtcacatgcgacgtctgccacggcgcccgctacaatcgcgagacgctggag
gtgaagttcaaggggatgagcatcgccgacgtgctcgacatgacggtcgaggatgcggtc
gaattcttcaaggccgtgccgccgatccgcgacaagatggcgatgctcgccgaagtgggc
cttggctatatcaaggtcggccagcaggccaccaccctgtcgggcggcgaagcccagcgc
gtcaagctcgccaaggaattgtcgcgccgcgccaccggcaacaccctctatatcctcgac
gaacccaccaccggcctgcatttcgaagatgtccgcaagctgctggaagtcctccacgcc
ctagtcgaacagggcaacagcgtcgtggtgatcgagcataatctcgatgttatcaagacg
gcggattatatcatcgacatgggaccggaaggcggcgtgaaaggcggcgaagtcgtcgcg
cagggcacgccggagcaggtggtgaaggagaagcgcagctttaccgggcgctatctggcg
ccgttgctggggctggaggctgtggcggcggagtaa |