KEGG   Serratia quinivorans: E4343_14510
Entry
E4343_14510       CDS       T05941                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
squ  Serratia quinivorans
Pathway
squ02024  Quorum sensing
squ03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:squ00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E4343_14510 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    E4343_14510 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:squ03019]
    E4343_14510 (hfq)
   03036 Chromosome and associated proteins [BR:squ03036]
    E4343_14510 (hfq)
Messenger RNA biogenesis [BR:squ03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     E4343_14510 (hfq)
Chromosome and associated proteins [BR:squ03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    E4343_14510 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QBX67318
LinkDB
Position
complement(3085201..3085509)
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNTPSGGTSNYHHGNNPSAPQQPQQESDDAE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgtgtt
ccggtttctatttatttggtgaatggtattaagctgcaaggccagattgagtcttttgac
cagtttgtcatcctgttgaaaaacacggtgagccagatggtttataagcacgctatctct
accgttgtcccgtcacgcccggtttcgcaccatagcaatactccgagcggcggcaccagt
aactatcaccatggtaacaacccgtctgcgccgcaacagccgcagcaggaaagcgatgac
gctgaataa

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