Serratia sp. AS13: SerAS13_3637
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Entry
SerAS13_3637 CDS
T02012
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sra
Serratia sp. AS13
Pathway
sra03030
DNA replication
sra03410
Base excision repair
sra03420
Nucleotide excision repair
sra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SerAS13_3637
03410 Base excision repair
SerAS13_3637
03420 Nucleotide excision repair
SerAS13_3637
03430 Mismatch repair
SerAS13_3637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sra03032
]
SerAS13_3637
03400 DNA repair and recombination proteins [BR:
sra03400
]
SerAS13_3637
Enzymes [BR:
sra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SerAS13_3637
DNA replication proteins [BR:
sra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SerAS13_3637
DNA repair and recombination proteins [BR:
sra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SerAS13_3637
NER (nucleotide excision repair)
GGR (global genome repair) factors
SerAS13_3637
MMR (mismatch excision repair)
DNA ligase
SerAS13_3637
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SerAS13_3637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AEG29403
UniProt:
A0A7U4DXZ9
LinkDB
All DBs
Position
complement(3880014..3882035)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMHELRELENAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVFMPQAG
FEQMNDEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVFPLHCPVCGSDVERVEG
EAVTRCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIEQLVEKEYVKNPADLFHLSAG
ILTGLDRMGPKSAQNLVNALEKSKRTTFARFLYALGIREVGEATAANLAAHFGELQKLYD
ADIDALKQVPDVGEVVAKHVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIA
VIDEAEMIRLLGV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgaacctcactgcgccatcacgaatac
caatatcatgtgcttgatgcgccggaagtgccggatgcggaatatgatcgtctgatgcat
gagttgcgtgagctggaaaacgcgcacccggagctgatcaccgccgattcaccgacccag
cgcgtgggcgccgctccgctggcggcgttcgatcaggtgcggcatgaagtgccgatgctg
tcgctggataacgtattcgacgaagaaagctttctggcgttctacaaacgcgtgcaggat
cgcctgaagagcagcgatccgctcactttctgttgtgagctgaagctggacggtctggcg
gtcagcctgctgtacgaagacggcgaactggtgcgtgcagccacgcgcggcgacggcacc
accggcgagaacattacctccaacgtgcgtaccatccgcgccattccgttgcgtctgagc
ggcgacaatatcccgcgtcggctggaagtgcgcggcgaagtgtttatgccgcaggccggc
tttgaacagatgaacgatgaggcgcgtcgcaaggacggcaagatatttgccaacccgcgc
aacgccgccgccggttctatccgtcagctcgatccgcgcattaccgccaaacgcccactg
acctttttctgctatggcgttggcctgctggaaggcggcgagctgccgcgcagtcactgg
cagcgcctgatgcagtttaaaaactggggcttaccggtcagcgatcgcgccaaatgctgc
accggcagcgacgaagtattggctttctaccgccaggtggagcaggaccgcgcacagctc
gggttcgatatcgacggtgtggtggtcaaaattgatgatatcgatctgcaggaaacgctt
ggctttgtggcgcgagcgccacgttgggcgacggcattcaagttcccggcgcaggaacaa
attaccgtggtgcgtgaagtggaattccaggttgggcgtaccggggcgataacgccggtg
gcgcgactggaaccggtgcaggttgccggcgtgatcgtcagcaacgccacgctgcacaat
gccgacgagatcgaacgtttgggcctgcgtatcggcgatacggtgatcgtgcgccgtgcc
ggtgacgtgatcccgaaggtggtcggggtgattgaggatcgccgcccgcaggacgcgcgt
gaaatcgtgttcccactgcattgcccggtctgtggttccgatgtggagcgggttgagggc
gaggcggtaacgcgttgtaccggtgggctgatttgcgccgcgcagcgtaaagaagcgctg
aagcacttcgtttcccggcgcgcgatggacgtcgacggcatgggcgacaagatcatcgag
caactggtagaaaaagaatatgtgaagaatccggccgatttattccacttgtccgcgggt
attctgaccgggttggatcgcatggggccaaagtcggcgcagaacctggtcaacgcgctg
gagaaatccaagcggaccacctttgcccgtttcctgtatgcgctcggcatccgcgaagtg
ggcgaggccacggcggctaacctggcggcgcacttcggcgaactgcaaaagctgtacgac
gccgatatcgacgcgttgaaacaagttccggacgtcggtgaggtggtggcgaagcatgtg
cgtcatttcctcgacgaagagcttaaccagaaggtgatcgacgaactgattggcgccgag
attggcatcaactggccggaagtggtggtggtagcggcggaagagatcgacagcccgttt
gccggtaaaaccgtggtgttgaccggttcgttgagccaactttcacgcgatgaggctaaa
gatcgtctgacggcactgggcgccaaggtcagcggcagcgtctcgaaaaagactgatttg
gtgattgccggcgaagcggccggctccaagctggtgaaggcgcaggaactgggcattgca
gtgatcgacgaagcggaaatgatccgcctgctgggtgtctga
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