KEGG   Streptomyces rapamycinicus: M271_36535
Entry
M271_36535        CDS       T02907                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
src  Streptomyces rapamycinicus
Pathway
src03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:src00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    M271_36535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:src03400]
    M271_36535
DNA repair and recombination proteins [BR:src03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     M271_36535
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      M271_36535
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII DEAD UVR AAA_16 AAA_22 UB2H AAA_5 DUF87 UvrD-helicase Helicase_RecD SIKE nSTAND3 AIG1 AAA_7
Other DBs
NCBI-ProteinID: AGP58710
LinkDB
Position
8949399..8951543
AA seq 714 aa
MRPVTQLERKVAPFEVVSPYQPSGDQPTAIADLDRRVRAGERDVVLLGATGTGKSATTAW
MIEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEK
DSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLKVGEEIDRDQ
LLRRFVDIQYNRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDQELYVFPATHYVAGPERMEKAIAGIEAELTETLARMEKQGKLLEAQRLRMRTTY
DIEMMRQIGTCSGIENYSLHIDGRETGSPPHTLLDYFPEDFLLVIDESHVTVPQIGAMYE
GDASRKRTLIEHGFRLPSALDNRPLKWEEFLERVGQTVYLSATPGTYEMSRGDGFVEQII
RPTGLVDPEVVVKPTEGQIDDLIHEIRTRTEKDERVLVTTLTKKMAEDLTDYMLELGIQV
RYLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGT
SLIQTIGRAARNVSGQVHMYADKVTPAMAKAIDETNRRREKQVAFNKANKIDPQPLRKKI
NDIVAQIAREDVDTEELLGTGYRKTKDGKGAKAAEPAAGGKAAKGGKAKAAKGKAKEEVL
TDRPAAELAEQIEEMTDRMRAAAAELQFEVAARLRDEVSELKKELRQMREAGVS
NT seq 2145 nt   +upstreamnt  +downstreamnt
atgcggcccgtaactcagctcgaacgcaaggtggcgcccttcgaggtcgtcagcccctat
cagcccagcggtgaccagcccaccgccatcgccgacctcgaccggcgcgttcgcgcgggg
gagagggacgtcgtcctgctcggcgcgaccggcaccggcaagtccgcgaccaccgcatgg
atgatcgagaaacttcagcggcccacgctggtcatggctccgaacaagacgctggccgcc
cagctggccaatgagttccgcgagctgctgccgaacaacgcggtcgagtacttcgtctcg
tactacgactactaccagcccgaggcgtacgtcccgcagtcggacacctacatcgagaag
gactcctcgatcaacgaggaggtggagcggctgcgccattcggcgacgaactcgctgctc
acccggcgtgacgtggtcgtggtggcctccgtctcctgcatctacggcctcggtacgccg
caggagtacgtggaccgtatggtgccgctcaaggtcggcgaggagatcgaccgcgatcag
ctgctgcgccgctttgtcgacattcagtacaaccgcaatgacatggcgttcacccggggc
accttccgggtccgcggcgacaccatcgagatcttcccggtctacgaggagctcgcggtc
cgcatcgagatgttcggcgacgagatcgaggcgctgtccacgctccatccgctcaccggc
gaagtgatcagcgacgaccaggagctctatgtgttcccggccacccactatgtggccggg
cccgagcgcatggagaaggccatcgccgggatcgaggccgaactcaccgagaccctggcc
cggatggagaagcagggcaagctgctggaggcccagcggctgcggatgcgcaccacctac
gacatcgagatgatgcggcagatcggcacctgctccggtatcgagaactactcgctgcac
atcgacggccgtgagaccggatccccgccgcacaccctgctggactacttcccggaggac
ttcctcctggtcatcgacgagtcgcatgtcacggtcccgcagatcggcgcgatgtacgag
ggcgacgcctcccgcaagcggaccctcatcgagcacggcttccggctgccctccgcactg
gacaaccgccccctgaagtgggaggagttcctggagcgcgtcggccagacggtctatctc
tccgccaccccggggacgtacgagatgtcccgcggcgacggcttcgtggagcagatcatc
cgcccgaccggcctggtcgacccggaggtcgtagtcaagccgaccgagggccagatcgac
gatctcatccatgagatccgcacccgcaccgagaaggacgagcgggtcctggtcactacc
ctcaccaagaagatggccgaggacctcaccgactacatgctcgagctgggcatccaggtg
cgctatctgcacagcgatgtggacaccctgcgccgggtcgagctgctgcgcgagctgcgc
gccggcgagttcgacgtactggtgggcatcaacctgctgcgggagggcctcgaccttccg
gaggtctcgctggtcgccatcctcgacgccgacaaggagggcttcctgcgctcgggcacg
tcgctgatccagaccatcggccgtgccgcccgtaacgtctcgggccaggtgcatatgtac
gccgacaaggtcaccccggcgatggcgaaggccatcgacgagaccaaccgccgccgcgag
aagcaagtcgcgttcaacaaggccaacaagatcgatccgcagccgctgcggaagaagatc
aacgacatcgtggcccagatcgcccgcgaggacgtcgacacggaggagctgctcggcacc
ggctaccgcaagacgaaggacggcaagggcgcgaaggcggccgagccggcggccggcggc
aaggcggccaagggcggtaaggcgaaggccgccaagggcaaggccaaggaggaggtgctg
accgaccggcccgcggccgagctcgccgagcagatcgaggagatgaccgaccgcatgcgg
gccgcggcggcggagctccagttcgaggtggcggcccgactgcgcgacgaggtgtcggag
ttgaagaaggagctgcggcagatgagggaggccggagtttcctga

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