Salpingoeca rosetta: PTSG_04436
Help
Entry
PTSG_04436 CDS
T04136
Name
(RefSeq) T-cell receptor beta chain ANA 11
KO
K12600
superkiller protein 3
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_04436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_04436
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PTSG_04436
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_8
TPR_19
TPR_1
TPR_14
TPR_16
TPR_12
ARM_TT21_5th
TPR_CcmH_CycH
TPR_6
TPR_7
ANAPC3
DUF4919
TPR_9
USP19_linker
NatA_aux_su
Wzy_C_2
Motif
Other DBs
NCBI-GeneID:
16075112
NCBI-ProteinID:
XP_004994531
UniProt:
F2U8K0
LinkDB
All DBs
Position
Unknown
AA seq
1434 aa
AA seq
DB search
MSKKLLKAAKAAIQAQEYDRALDAANQILDDEPDHFHALLFAAIAHAKLGDFTSAQQRYK
DALAADSTQAVVHQGLAELYEARLRDDEDAEDEMLSLLKDTYNTLLTMQGNNATVKGELV
LSRLSRVEDKLEHFQEAANLVRRAADIASEPAEKLDLWTRALELTMKREAGLDRAKKLSY
PDPVARRRAIMDDIENDPQSATAPVISAMLPLVEQGHPEKATVRLLVRRIQALWSVGRMD
TAAAVRAFRLGVSAIQPASTDDDVRDDGGVDDTATKKAAVETALALYSNLACDDEGAQLI
QDCKEVGVIASLADSIEDSDVAVALKVERALNTSSPTSVNWDELQAEVEKTVDTHADTRD
LILLRKHLALLLYSRDDFAGCDRTCQAALERINALNAEAAGRKLRRMWEWFTVMHAVTMT
HLDTLHLKQHQTTLATHAENAFAQAGLARIAARWNKRDLAMMHAETSVSLDNMCGTAHAA
LAVARGMAGDVDGAVAAAKAAVDVQPTCADHHYQHGRFLTLQHQQRLRQQQQQQQQDGRD
SAGGSSVAGTTTTTTTTTTSEVEIDAALPIPRTALRPWLLCLRVSRGHSNALYYIGCYYA
ATNMDKAVRCYAKALEAEPLHPKAAHALWLAHMRAGRTENADALVTTLAAHAGSDRLSWV
WMRKALLELGSGDVGTAVVSLQTALRADTGSALLWQLLGEAYHRRGSFLAAHKAFDQCLE
RDPACLHAMYMKGLALLRLGDEEEAMHTFQSVLDIDNTHAPAIEGLASALYSNARTFYRN
RRPELCLDAINHALAVLQPALHSSNPYVCLWKLCGDAYELATQLPPTTMARVQPIMFAST
AAASNAAGEDAGAQDTCFAVLNACAAAAFARVVRSHATAGAYCDLAVNRWRLYSSKHAKR
AGPREDTLLHQVQRLCMQALTLDRDYTDAWNMLGIAAFALQDVRLAYNSFANAATSSPSS
ASTWVHIGALFKSRGRTREAHRAFTQAQMLDPGKSRAWIGQALVAAEVQHEETLDLFRHA
LELYPHGSAARAFAFYTLESLRPKRHSATPNSGSGAGSSGRRGHVPTPTGDVPRGCEEQY
LLQASTALIALTSTAGGSADVCVHNMCGVLYERLRLYKRAEQLYRQALDLAQQQQAHAAS
DSADDSDNNGNSNNVNNGVHLAVIKHNLARCLALQGSAECLPLFAQEVEAGTADTSTLCL
YAKALLEQGDIAAAFQVYKHAHDASPGSEDRAEIAASMAVVAFANDEVDLAKQLLAEATR
DPAACPPAVFITAALGLFAGDLQLAEHALAYGPQLWTDGTNSSKPFVSEYLRLSAFAYAM
AGAPKVAQSFLMQLIHVFPEDASTWTLLAQVLCGGNPAPAATSAAVVALKASAAASATHS
AREMEAAALLARGAHDARARLEYPAPTPRSTAPQSSEGAQNAVETEVWPRMLML
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaagttgctgaaggcggccaaggcggcgattcaggcgcaggagtacgacagg
gcactggacgcagccaaccaaatcctggacgatgagccggaccattttcacgcactgctc
ttcgctgctattgcacacgccaagcttggcgacttcaccagcgcccaacagcgatacaag
gatgcactggcggcagattctacccaggccgtcgtccaccagggcctggctgagttgtat
gaggcgcggctgcgcgacgatgaagatgccgaagacgagatgctgtcgctgctcaaggac
acctacaacacgctgctgaccatgcagggaaacaacgccaccgtcaagggcgagcttgtt
ctgagccgcctctcccgcgtggaggacaagctggagcacttccaggaggccgcgaatttg
gtgcgaagggccgccgatattgctagcgagcctgcagagaagctggacctgtggacacgt
gcgttggagctgacgatgaagcgagaggctgggcttgaccgtgccaagaagctcagctat
ccagaccccgtcgccaggcggcgggccatcatggacgacattgagaacgatccgcagtcc
gccacggcgcctgtcatctctgccatgctgccacttgtcgagcagggccaccccgaaaag
gcgacggtgcggctgttggtgaggcggatccaggcgctgtggagcgttggccgtatggat
acggccgcggcggtgcgcgcgtttcgactcggtgtcagcgccatccaacctgccagcact
gacgatgatgttagagacgatggaggtgttgatgatactgcgacgaagaaagctgctgtg
gagacggcactggcgctgtactccaacctggcttgcgatgatgagggtgcacaactcatt
caagactgcaaggaggtgggtgtgattgcttccctcgccgactccatcgaggactcggac
gtggccgtcgctctcaaagtggagcgagcgctcaacacttcatcgccgacgagcgtcaat
tgggacgaactgcaggcggaggtcgagaaaaccgtggacacacacgcagacacgcgggac
ctcattctcctccgaaagcacctcgccctgctgctgtacagccgggatgactttgcgggc
tgcgatcgcacgtgccaagcggctctcgaacgcatcaacgcgctcaacgcagaggcggca
ggacgaaagctccggcgcatgtgggaatggtttacggtgatgcacgccgtgacgatgacc
cacctcgacacgctgcacttgaagcagcaccaaaccacgctcgctacacacgcggaaaac
gcctttgcacaagccggcctggcgcggatcgctgcccggtggaacaagcgcgatcttgcc
atgatgcacgcggagacttcggtttcgctcgacaacatgtgcggtactgcccatgcggcc
cttgcggtggcgcggggtatggcgggcgatgtggatggcgcagtggcggcggccaaagca
gccgtggacgtccagccgacgtgcgctgaccaccactaccaacacggcagattcctcacg
ctgcagcaccagcagcgcttacgacaacaacagcagcaacagcagcaggacgggagagac
agtgccggcggcagcagcgtggccggcaccaccaccaccaccaccaccaccaccacatcc
gaggtggagattgacgctgcccttcccatcccacggacagcattgcgtccatggctcctg
tgtcttcgcgtcagccgcggccacagcaacgccctgtactacattggctgctactacgcc
gccaccaacatggacaaggctgtgcgctgctatgcaaaggcacttgaggctgaacccctg
catccgaaggccgcccatgccctttggctcgcacacatgcgcgcggggcgaacggagaac
gcggatgcactggtgacgacactggcggcgcacgcgggctctgatcggctgtcgtgggtg
tggatgcgcaaggcgttgcttgagctcggcagcggggacgtgggcacagccgttgtctcg
ctgcagacggccctgcgtgcagacacgggcagcgcgctgctgtggcagctgcttggagag
gcgtaccaccggcgcggtagcttcctcgccgcgcacaaggcgtttgaccagtgcctcgag
cgagacccagcgtgcctgcatgcaatgtacatgaaaggactggcgctgctgcggcttggg
gacgaggaagaggccatgcacacgttccagtctgttctcgacattgacaacacgcacgcg
cccgccattgaagggcttgcctcggcgctgtactccaatgcgcgcacgttctatcggaac
agacgtcccgaactctgccttgacgcaatcaaccacgccctcgccgtcctccagccagcc
ctgcactcctccaacccatacgtgtgcctgtggaagctgtgcggtgacgcgtatgagctg
gccacgcagctgccgcccacgaccatggcccgcgtgcaacccatcatgttcgcctccaca
gcggctgcatcgaatgctgctggcgaagatgctggagctcaagacacctgctttgcggtg
ctcaacgcatgtgctgctgctgcgttcgcgcgtgttgtgcggtcgcatgcgacggccggc
gcctattgcgacctcgccgttaaccgctggcggctgtacagcagcaagcacgcgaaacgc
gccggaccacgggaagacaccctcttgcatcaggttcagcgcttgtgcatgcaggcactg
accttggatcgcgactacaccgacgcgtggaacatgctcggcatcgccgcatttgcactc
caggacgtgcgccttgcgtacaacagctttgcgaacgcggccacgtcctcccccagcagc
gcatccacgtgggtgcacattggggcgctgtttaaatcgcgcggcagaacacgcgaggcg
caccgtgcgttcacacaggcgcagatgctggacccaggcaagtcgcgggcgtggattggg
caggcgctggtggccgcggaggtgcagcacgaagagacgcttgatctcttccgccacgcg
cttgagctatatccacacggcagtgccgcccgcgcgtttgcattctacacgctggagtca
cttcgccccaagcggcactccgccacacccaatagcgggagtggtgccggcagcagcggt
cgtcgcggacatgtgccgacaccaacgggcgacgtgccgcgtggatgcgaggagcagtac
ctgctgcaggcgagcacagcgctgatagcgctcacatcaacagcaggcggcagcgcagac
gtgtgtgtgcacaacatgtgcggcgtcctgtacgagcgcctgcgtctgtacaaacgcgcg
gaacagctctaccgacaagcgcttgacctcgcccagcagcaacaggcgcacgctgcttcc
gacagtgctgatgacagcgacaacaacggcaacagcaacaatgtcaacaacggcgtgcat
cttgctgtcatcaagcacaaccttgcgcggtgcctggcgctgcagggcagtgcggagtgt
ctgccgctgtttgcacaagaagtggaagctggcacagcagacacgtccacgctctgtctt
tacgcaaaggcgctcctggaacagggcgacatcgctgcagcatttcaggtgtacaagcat
gcacatgatgcatcaccgggcagcgaggaccgggcggagattgctgcgagtatggctgtt
gttgcttttgccaacgacgaggtggaccttgccaagcagctgttggctgaggcgacacgt
gatccggcggcctgcccgccagccgtcttcatcaccgccgctctcggtctctttgccggc
gatctgcagctcgcagagcacgcgcttgcgtatgggccgcagctgtggacggatggcaca
aattccagcaagccgtttgtgtcggagtacttgcgtttgtcggcgtttgcatatgcaatg
gcgggggcgcctaaagttgctcagtccttcctcatgcagctgatccatgtcttccccgag
gacgcaagcacgtggactctgcttgcacaggtgttgtgcggcggcaatccagcgccagca
gccacatcagcagcggtcgttgcgctcaaggcctctgctgctgcgtctgcaacccactct
gcacgcgagatggaggctgctgccctcctcgcccgcggcgcacacgacgcacgcgcccgg
ctcgaataccctgcccccactccccgcagcacggcgccacagagcagcgagggcgcacag
aatgccgtcgagacggaggtgtggcctcgaatgctgatgctctga
DBGET
integrated database retrieval system
