KEGG   Salpingoeca rosetta: PTSG_09397
Entry
PTSG_09397        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sre  Salpingoeca rosetta
Pathway
sre03018  RNA degradation
sre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTSG_09397
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTSG_09397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_09397
   03041 Spliceosome [BR:sre03041]
    PTSG_09397
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PTSG_09397
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PTSG_09397
Spliceosome [BR:sre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PTSG_09397
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 16070205
NCBI-ProteinID: XP_004989654
UniProt: F2UMI2
LinkDB
Position
Unknown
AA seq 115 aa
MLPLSLIRAAVNHPMLVELKNGESYNGHLVNCDHYMNIILRGVTLTSKDGDRFWKLKECY
IRGSTIKYLRLPDEIIDMVIQSEKRPRGGRKTRGRGGGRGRGRGRGGRGRGGGRA
NT seq 348 nt   +upstreamnt  +downstreamnt
atgcttccactgtccttgattcgtgcggccgtcaaccaccccatgttggtggagctgaag
aacggcgagtcctacaacggccatttggtcaactgcgatcactacatgaacattatccta
cgcggcgtcactctcacctccaaggatggcgatcggttctggaagctcaaggaatgctac
atccgcggcagcaccatcaagtacctgaggttgcccgatgagattatcgacatggtcatc
cagtcagagaagcggcctcgtggcgggcgcaagacgcgcgggcgtggcggtggtcgtggt
cgtggtcgtggtcgcggtggccgcgggcgtggcggtggtcgcgcataa

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