Salpingoeca rosetta: PTSG_09397
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Entry
PTSG_09397 CDS
T04136
Name
(RefSeq) uncharacterized protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_09397
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_09397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_09397
03041 Spliceosome [BR:
sre03041
]
PTSG_09397
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PTSG_09397
mRNA degradation factors
5'-3' decay
Lsm complex
PTSG_09397
Spliceosome [BR:
sre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PTSG_09397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
16070205
NCBI-ProteinID:
XP_004989654
UniProt:
F2UMI2
LinkDB
All DBs
Position
Unknown
AA seq
115 aa
AA seq
DB search
MLPLSLIRAAVNHPMLVELKNGESYNGHLVNCDHYMNIILRGVTLTSKDGDRFWKLKECY
IRGSTIKYLRLPDEIIDMVIQSEKRPRGGRKTRGRGGGRGRGRGRGGRGRGGGRA
NT seq
348 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactgtccttgattcgtgcggccgtcaaccaccccatgttggtggagctgaag
aacggcgagtcctacaacggccatttggtcaactgcgatcactacatgaacattatccta
cgcggcgtcactctcacctccaaggatggcgatcggttctggaagctcaaggaatgctac
atccgcggcagcaccatcaagtacctgaggttgcccgatgagattatcgacatggtcatc
cagtcagagaagcggcctcgtggcgggcgcaagacgcgcgggcgtggcggtggtcgtggt
cgtggtcgtggtcgcggtggccgcgggcgtggcggtggtcgcgcataa
DBGET
integrated database retrieval system