Sphingomonas rhizophila: H9L12_08075
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Entry
H9L12_08075 CDS
T07014
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L12_08075 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srhi03021
]
H9L12_08075 (rpoB)
03400 DNA repair and recombination proteins [BR:
srhi03400
]
H9L12_08075 (rpoB)
Enzymes [BR:
srhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L12_08075 (rpoB)
Transcription machinery [BR:
srhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L12_08075 (rpoB)
DNA repair and recombination proteins [BR:
srhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L12_08075 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QNN64302
UniProt:
A0A7G9S8X7
LinkDB
All DBs
Position
1574559..1578731
Genome browser
AA seq
1390 aa
AA seq
DB search
MATKAKDVPASTGRSVHTNTRRIRKIFGNIHEISEMPNLIEVQRESYEQFLRSDPSIGYV
SGLEKTLRSVFPIQDFAGTAHLDFDRYELEEPKFDTDECRQRGLTYAAPMRVTLRLTSFE
IDPDTEAKSVIDIKEQDVYMGDMPLMTGNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKT
HASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLSSEEILNTF
YNRLTYVRGSNGWQIPYAAEGWRGQKPTHDVVDADSGEVIFKAHEKITPRKANAAGKDGL
KNVIIPTEEIFGRFSAYDLINEKTGEIYVEAGDEISAENLEKLDKAGVDRLELLDIDYVN
TGPWIRNTLKADKAEDGDQALADIYRVMRPGEPPTRETADALFYGLFFDAERYDLSAVGR
VKLNMRLGLDAEDTVTTLRREDIIAVVQELVNLKDGKGEIDDIDNLANRRVRSVGELLEN
QYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLS
EVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVN
KYGFIETPYRKVVDNKVTDEVVYLSAMEEAKHTIAQANAELDQNGAFLEEIVSSRRAGDF
LMAPRDTITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQADAPLVGT
GMEETVARDSGAAIAARRAGIVDQVDASRIVIRATGELRAGESGVDIYTLMKFQRSNQNT
CINQRPLVKVGDTVETGEIIADGPSTQFGELALGRNVLVAFMPWNGYNYEDSILISERIV
KDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDIL
CGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDIDD
RTRAIQTEEKERLKKDADDEKAILNRATFTRLREMLIGQTATAAPKGMKKGATVDEAMLE
ETPKHEWWKVAVKDDARQSDLEALKAQYDESVQVIDRKFEDRVQKVEAGDELAPGVLKMV
KVFVAVKRKLQPGDKMAGRHGNKGVISRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVG
QIFETHLGWAARGLGKQIGEMLEGMHGRGAEISGKDAKEIREKLKDIYGDNYAKDIDARS
DEGVMELAANLVGGVPMGTPVFDGAREADVSAMLEKAGLDTSGQVTLFDGRTGEAFDRKV
TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY
TLQEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLSVELDSIEDP
DAEPTAIAAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagcgaaagacgtgccggcctcgacgggccgttcggttcacaccaacacg
cgtcgcatccgcaagatcttcggtaacatccatgagatcagcgagatgccgaacctgatc
gaggtccagcgcgagagctatgaacagttcctccgctccgacccttcgatcggctacgtc
tcgggtctcgaaaagaccctccgctcggtcttcccgatccaggatttcgcgggcaccgcg
cacctcgacttcgaccgctatgagctggaagaaccgaagttcgacaccgacgagtgccgc
cagcgtggcctgacctacgccgcgccgatgcgcgtcaccctgcgcctgaccagcttcgag
atcgatcccgacaccgaagccaagtcggtcatcgatatcaaggagcaggacgtctacatg
ggcgacatgcccctgatgacgggcaacggcaccttcatcgtcaacggcaccgagcgcgtc
atcgtgtcgcagatgcaccgttcgccgggtgtcctgttcgaccatgaccgcggcaagacc
cacgcgtcgggcaagtatctcttcgccgcgcgcgtcatcccgtatcgcggctcgtggctc
gacttcgaattcgacgccaaggacatcgtcaacgtccggatcgaccgcaagcgcaagctg
ccggtgaccgcgctgctccatgcgctgggcctgtcgagcgaggaaatcctcaacaccttc
tacaaccgcctgacctacgttcgtggttcgaacggctggcagatcccctacgccgccgaa
ggctggcgcgggcagaagccgactcacgacgtggtcgacgccgacagcggtgaggtcatc
ttcaaggcgcacgagaagatcaccccgcgcaaggccaatgccgccggcaaggatggcctc
aagaacgtcatcattccgaccgaggaaatcttcggccgcttctcggcctatgacctgatc
aacgagaagaccggcgaaatctacgtcgaggccggtgacgagatctcggccgagaacctg
gagaagctcgacaaggccggtgtcgaccgcctcgagctgctcgacatcgactacgtcaac
accggtccctggatccgcaacacgctgaaggccgacaaggccgaggacggcgaccaggcg
ctggccgacatctatcgcgttatgcgccccggcgagccgccgacgcgcgagaccgccgac
gcgctgttctacggcctgttcttcgacgccgagcgctacgacctttcggccgtgggccgc
gtcaagctgaacatgcgccttggccttgacgccgaggacacggtcaccactttgcgccgc
gaagacatcatcgcggtcgtccaggaactggtgaacctgaaggacggcaagggcgagatc
gacgacatcgacaacctcgccaaccgccgcgtccgttcggtcggcgagctgctggaaaac
cagtatcgcgtcggcctgctgcgcatggaacgcgcggtgaaggagcgcatgagcagcgtc
gacgtgtcgacggtcatgccgaacgacctgatcaacgccaagccggcggtggccgccgtg
cgcgaattcttcggcagcagccagctgtcgcagttcatggaccagaccaacccgctgtcg
gaagtcacccacaagcgccgtgtctcggcgctcgggccgggcggcctcacccgtgagcgc
gccggcttcgaagtccgcgacgttcacccgacgcactatggccgcatctgcccgatcgaa
acgccggaaggcccgaacatcggcctgatcaacagcctggcgtcgttcagccgcgtcaac
aagtacggcttcatcgaaacgccttatcgcaaggtcgtcgacaacaaggtgaccgacgag
gtcgtctacctgtcggcgatggaagaggccaagcacaccatcgcgcaggccaacgccgag
ctcgaccagaatggcgccttcctcgaggaaatcgtctccagccgtcgcgccggtgacttc
ctgatggcgccgcgggacaccatcaccttgatggacgtcagccccaagcagctggtgtcg
gtcgccgcgtcgctcatcccgttcctggagaacgacgacgccaaccgcgcgctgatgggt
tcgaacatgcagcgccaggccgtgccgttgctgcaggccgacgcgccgctggtcggcacc
ggcatggaagagaccgtcgcccgcgattcgggcgcggcgatcgccgcccgccgggccggc
atcgtcgaccaggtcgacgccagccgtatcgtcatccgcgccaccggcgaacttcgcgcc
ggtgaatcgggcgtcgacatctacacgctgatgaagttccagcggtcgaaccagaacacc
tgcatcaaccagcgtccgctggtgaaggtcggtgacacggtcgagaccggcgagatcatc
gccgatggtccctcgacccagttcggcgagctggcgctcggccgcaacgtgctcgtcgcg
ttcatgccgtggaacggctacaactatgaggactcgatcctcatttccgaacgcatcgtg
aaggacgacgtcttcacctcgatccacatcgaggaattcgaagtcatggcccgcgacacc
aagctggggccggaagacatcacccgcgacatccccaacgtcggcgaggaagcgctccgc
aacctcgacgaggcgggcatcgtctacatcggtgccgaggtcgagccgggcgacatcctg
tgcggcaagatcacgccgaagggcgaaagcccgatgactccggaagaaaagctgctccgc
gcgatcttcggtgaaaaggccagcgacgtgcgcgacacctcgctccgcctgccgccgggc
gttgccgggacggtcgtcgaggtgcgcgtgttcaaccgtcacggcatcgacatcgatgac
cgtacgcgcgccatccagaccgaggaaaaggaacgcctgaagaaggacgccgacgacgag
aaggcgatcctcaaccgcgccaccttcacccgtcttcgcgaaatgctgatcggccaaacc
gccaccgcggcgccgaagggcatgaagaagggcgccacggtcgacgaggcgatgctggag
gaaaccccgaagcacgaatggtggaaggtcgccgtcaaggacgacgcccgccagtcggac
ctcgaggcgctgaaggcccagtacgacgagagcgtccaggtcatcgaccgcaagttcgag
gaccgggtgcagaaggtcgaggccggcgacgaattggccccgggcgtgctgaagatggtc
aaggtcttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcac
ggcaacaagggcgtcatcagccggatccttccggtcgaggacatgccgttcctggaggac
ggcacccacgccgacatcgtgctgaacccactgggcgtgccgtcgcgcatgaacgtcggg
cagattttcgaaacccaccttggctgggccgcgcgcggccttggcaagcagatcggcgag
atgctggaaggcatgcacggccgcggggcggagatcagcggcaaggacgcgaaggaaatc
cgcgagaagctcaaggacatctacggcgacaattacgccaaggacatcgacgcccgcagc
gatgagggcgtgatggagctggcggccaacctggtcggcggcgtcccgatgggcaccccg
gtgttcgacggcgcccgcgaggccgacgtgtcggcgatgctggaaaaggccggtctcgat
acctcgggccaggtcacgctgttcgacggccgtaccggcgaggcgttcgatcgcaaggtg
accgtgggctacatctacatgctgaagctccaccacctggtcgacgacaagatccacgcg
cgttcgatcgggccgtacagcctggtcacccagcagccactgggcggcaaggcgcagttc
ggcggccagcgcttcggcgaaatggaggtctgggcgctccaggcctacggcgccgcctac
acgctgcaggaaatgctgacggtgaagtcggacgacgtcatcggccgcaccaaggtctac
gaggcgatcgtcaagggcgacgacacgttcgaagcgggcattccggagagcttcaacgtg
ctcgtcaaggagatgcgctcgctgggcctcagcgtcgagctggactcgatcgaggatccg
gacgccgaaccgaccgccatcgccgccgaataa
DBGET
integrated database retrieval system
