Sphingomonas rhizophila: H9L12_08080
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Entry
H9L12_08080 CDS
T07014
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L12_08080 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srhi03021
]
H9L12_08080 (rpoC)
03400 DNA repair and recombination proteins [BR:
srhi03400
]
H9L12_08080 (rpoC)
Enzymes [BR:
srhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L12_08080 (rpoC)
Transcription machinery [BR:
srhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L12_08080 (rpoC)
DNA repair and recombination proteins [BR:
srhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L12_08080 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QNN64303
UniProt:
A0A7G9S8X8
LinkDB
All DBs
Position
1578785..1583056
Genome browser
AA seq
1423 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIRIGIASPDKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGLTSLEKYQLLTEDELLNAQDEFGEDAFSAG
IGAEAVRTMLMDLDLEGERKELLDELAVTKSELKPKKIIKRLKVVESFIDSGNKPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKEGEPGEGSLLADMTEVHQALSA
GAVTLHSKIVSRVPQTDEAGKQYMKRFETTPGRMLLGETLPKSHKVPFETVNRLLTKKEI
GDVIDTVYRHTGQKETVLFADAIMGLGFRHAFKAGISFGKDDMVIPASKEGLVDETRSLV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVATAMMKEISSVKKGEDGREAPINSIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDAVIIEEDCGTDRMLEMRAIVQGGAVIASLSDRVLGRTTA
EDIVDPKTNDVLIKEGTLLDEAMVAQIEALGLQGMKIRSPLVCASQQGVCAKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGTIELRDMPTI
TDPRGRHISLSRSGEIAILDMDGRELSTHRIPYGAHLMVESGHIISRGDRIAEWDPSYSP
VITERAGTVKYQDLIENRTMTEQTDESTGITQRVVNDDIAKSKKEDLRPRLTLTGADAAE
AGVYRLAPGAIVAVEDGATVEAGEVLARMPREAAKTRDITGGLPRVAELFEARKPKENAI
IAKVSGKVSFKKDYKAKRKIAIIPEDGSEEVEYLVPKSKVIDVQEGDYVKRGDNLVGGSP
DPHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTVLL
AGEQVDREEMDEQNSKLGKGKTPAQGRPVLLGITKASLQTRSFISAASFQETTRVLTEAS
VQGKIDTLNGLKENVIVGRLIPAGTGAGMNRLRVAATSRDASLRAAQRKLQEALIAPNSA
EEEHAAELAQSPRDASATGPDPLAEVVTSGTGTDADAGDYLND
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgaccaacttcgcgaacccggtggccaagccggaaaccttcgaccagatc
cgcatcggcattgcgtcgccggacaagatccggtcgtggtcgttcggcgagatcaagaag
ccggagacgatcaactatcgcacgttcaagccggaacgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgagaagtgcggtgtcgaagttaccgtctcgaaggtccgccgtgag
cgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctgaagtcgttg
ccgtcgcgcatcggcctgctgctcgacatgcagctgaagcagctggagcgcatcctctac
ttcgaaagctatgttgtcatcgaaccgggcctcaccagcttggagaagtaccagcttctg
accgaggacgagctgctcaacgcgcaggacgagttcggcgaggacgccttctcggccggc
atcggcgccgaggccgttcgcaccatgctgatggacctcgacctcgaaggcgagcgcaag
gagctgctcgacgagctggcggtcaccaagtcggaactcaagccaaagaagatcatcaag
cggctgaaggtcgtcgagagcttcatcgactccggcaacaagccggaatggatgatcctc
gaggtaattccggtaatcccgcccgagctgcgcccgctggtgccgctggacgggggtcgc
ttcgcgacgtcggatttgaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctc
aagcgcctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctt
caggaagccgtcgacgcgctgttcgacaacggccgccgcggccgcaccatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgg
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccg
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatttactcgcgcctcgacgccaagggtctgtcgatgaccctgaagcaagccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcctcctcaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggcgttcaacgcc
gacttcgacggtgaccagatggccgtgcacgttccgctgagcctcgaagcccagctggaa
gcgcgcgtcctgatgatgagcaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctgggtctctattacctgtcgatggagaaggaaggc
gaaccgggcgaaggctcgctgctcgccgacatgaccgaagttcaccaggcgctgtcggcc
ggggcggtgacgctccactccaagatcgtcagccgcgtcccgcagacggacgaggccggc
aagcagtatatgaagcgcttcgaaacgaccccgggccgcatgctgctcggcgaaacgctg
ccgaagagccacaaggtgccgttcgagaccgtcaaccgccttctcaccaagaaggagatc
ggcgacgtcatcgacaccgtctatcgccacaccggccagaaagagaccgtcctgttcgcc
gacgcgatcatgggcctcggcttccgtcacgccttcaaggccggcatctcgttcggcaag
gacgacatggtcatcccggcatcgaaggaaggcctggtcgacgaaactcgtagcctggtg
aaggactatgaacagcagtaccaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggtcgcgttgcggtgaccaggtcgccacggccatgatgaaggaaatc
tcgtccgtgaaaaagggcgaggatggccgcgaggcgccgatcaactcgatctacatgatg
gcccactcgggcgctcgtggttcgcaggcgcagatcaagcagcttgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatacttcaactcgacccacggcgcccgcaagggcctggccgac
acggcgcttaagacggcgaactcgggctacctgacccgccgcctcgtcgacgtgtcgcag
gacgcggtgatcatcgaggaagattgcggcaccgaccgcatgctggagatgcgcgccatc
gttcagggcggcgcggtgatcgcctcgctcagcgatcgcgtgcttggccgcaccacggcc
gaggacatcgtcgatccgaagaccaacgacgtcctgatcaaagaaggcacgctgctcgac
gaagcgatggtcgcccagatcgaggcgctcggccttcagggcatgaagatccgctcgccg
ctggtgtgcgcgtcgcagcagggcgtttgcgccaagtgctacggccgtgaccttgcccgc
ggtacgccggtcaacatcggtgaagccgtcggcgtcatcgccgcccagtcgatcggtgag
ccgggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtcgaacctcgaggcgccggtcgacggcacgatcgagcttcgcgacatgccgacgatc
accgacccgcgcggccggcacatctcgctgtcgcgttcgggcgagatcgcgatcctcgac
atggacggccgtgaactcagcacccaccgtattccgtacggtgcgcacctgatggtcgaa
agcggtcacatcatcagccgcggcgaccggatcgccgaatgggacccgtcgtatagcccg
gtcatcaccgagcgggccggtacggtgaagtaccaggacctgatcgagaaccgcacgatg
acggaacagaccgacgagtcgaccggcatcacccagcgcgtcgtcaacgacgacatcgcc
aagtcgaagaaggaagaccttcgtccgcgcctcaccctgacgggtgccgacgcggccgag
gccggcgtctatcgactggcgccgggcgcgatcgtcgcggtcgaggacggtgcgaccgtg
gaggccggcgaagtgctcgcccgcatgccgcgtgaagccgccaagacccgtgacatcacc
ggcggtctgccgcgcgtcgccgagctgttcgaagcccgcaagccgaaggaaaacgcgatc
atcgcgaaggtcagcggcaaggtcagcttcaagaaggactacaaggccaagcgcaagatc
gcgatcatccccgaggacgggtcggaggaggtcgaatacctcgtcccgaagtcgaaggtg
atcgacgtccaggaaggcgattacgtcaagcgcggcgacaacctcgtcggtggttcgccc
gatccccacgacatcctcgaagtgctcggcgtggaagcgctggccgaatatctcgtcagc
gagattcaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggttgagatcaccgacggaggcgacaccgtcctcctg
gccggcgaacaggtcgaccgcgaggaaatggacgagcagaactcgaagctcggcaagggc
aagacgcccgcgcagggccgcccggtgctgctcggcatcaccaaggcgtcgctgcagacc
cgcagcttcatctcggcggcgtccttccaggaaacgacccgcgtcctcaccgaggcgtcg
gtccagggcaagatcgatacgctgaacggtctcaaggagaacgtcatcgtcggtcgcctg
atcccggcgggaaccggtgccggcatgaaccgcctgcgcgttgcggccaccagccgcgat
gcctcgctccgtgccgcgcagcgcaagctgcaggaagcgctgatcgcgccgaacagcgcc
gaggaagagcatgccgccgagctggcccaaagcccgcgcgacgccagcgccacgggtccg
gatccgctggccgaggtcgtcacctcgggcaccggcacggacgccgacgcgggcgactac
ctcaacgactga
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integrated database retrieval system
