KEGG   Serratia plymuthica 4Rx13: SOD_c18460
Entry
SOD_c18460        CDS       T02710                                 
Symbol
ycfD
Name
(GenBank) YcfD
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
srl  Serratia plymuthica 4Rx13
Brite
KEGG Orthology (KO) [BR:srl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:srl03009]
    SOD_c18460 (ycfD)
Enzymes [BR:srl01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     SOD_c18460 (ycfD)
Ribosome biogenesis [BR:srl03009]
 Prokaryotic type
  ribosomal protein modification factors
   SOD_c18460 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA Cupin_1 Cupin_2 AraC_binding
Other DBs
NCBI-ProteinID: AGO54823
LinkDB
Position
complement(2010680..2011801)
AA seq 373 aa
MDYQLDLDWNDFLQRYWQKRPVILKRGFKNFIDPISPDELAGLAMENEVDSRLVSHQDGR
WQVAHGPFESFDHLSENNWSLLVQAVDHWHEPSSALMRPFRQLPDWRMDDLMISFSVPGG
GVGPHLDQYDVFIIQGTGRRRWRVGEKVPMKQHCPHPDLLQVEPFDAIIDEEMEPGDILY
IPPGFPHEGYALENALNYSVGFRAPNGRELISGFADYVLARELGSQRYSDPDIQLRDQPA
QILPQEVYALRQMMLDLVQQPEHFQHWFGEFISQTRHELDAAPPEPPYQAGEIYELLQQG
EPLQRLGGLRVLRVGDRCFVNGELIDTEHLQAADALCQHFSVNAAMLGDAIDDPSFLATL
TALINSGYWYFND
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggattatcaattagatctcgactggaacgactttttgcaacgttactggcaaaagcgt
ccggtaattctgaagcgcggcttcaaaaactttatcgatccaatctccccggatgagctg
gccgggctggcgatggaaaacgaagtggatagccgcctggtcagccaccaggacggccgc
tggcaggttgcgcacggtcccttcgagagctttgaccacctgagcgagaacaactggtcg
ctgctggtacaggcggtggaccactggcatgagccttccagcgcgctgatgcgccctttc
cgccaactgccggactggcgaatggacgacctgatgatttcgttctcggtcccgggcggc
ggcgttggcccgcacctcgatcagtacgacgtctttatcattcaaggcaccggccgtcgc
cgctggcgcgtaggcgagaaggtgccgatgaagcagcactgcccgcatccggatctgctg
caggttgagcctttcgacgccattatcgacgaagaaatggagccgggcgacattctgtat
atcccgccgggcttcccgcatgaaggctacgcgctggaaaatgcgctgaattactcggtg
ggcttccgcgcaccgaacggccgcgagttgatcagcggctttgccgattacgtgctggcg
cgcgagctgggcagccaacgttacagcgatccggacattcagttgcgcgaccaaccggcg
cagatcttgccgcaggaagtctacgccctgcgccagatgatgttggatctggttcagcaa
ccggaacatttccagcactggttcggtgagtttatttctcagactcgccacgagctggac
gcagcgccgccggaaccgccgtatcaggccggagaaatctacgagctgctgcaacagggt
gaacccttgcaacgcctgggcggcctgcgcgtgctgcgcgttggcgaccggtgctttgtg
aatggcgagctgattgataccgaacatctgcaagccgccgacgcgctgtgccagcatttc
agcgttaatgccgccatgctgggcgatgccatcgacgatccgtcgttcctggccaccctc
accgcgctgatcaacagcggttactggtacttcaacgactaa

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