Salinibacter ruber M8: SRM_01971
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Entry
SRM_01971 CDS
T01209
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
srm
Salinibacter ruber M8
Pathway
srm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SRM_01971 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srm03021
]
SRM_01971 (rpoB)
03400 DNA repair and recombination proteins [BR:
srm03400
]
SRM_01971 (rpoB)
Enzymes [BR:
srm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SRM_01971 (rpoB)
Transcription machinery [BR:
srm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SRM_01971 (rpoB)
DNA repair and recombination proteins [BR:
srm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SRM_01971 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CBH24892
UniProt:
D5HA37
LinkDB
All DBs
Position
complement(2250822..2254829)
Genome browser
AA seq
1335 aa
AA seq
DB search
MAHGPAPPDDRHESPCFRGPTHGIRTRAVRRVGCFANAVYSRERYLQPMPTFLNGDITTP
GHLVDPDPRESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPI
KDNRDRYTLEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLTSKEEEGGEEAIEAIEQ
EVYLGTLPFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKEIHSNGTELFSARVIPFRGSW
MEFSTDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEFEEHL
GRELATSVTIEKTIEIVDEDTGEVVDEEMEREVLLPAEHELEEGDWEELDEYDVSRLYLV
REDVEDEALDKSTLVETLQKDSSHTEEEALEVIYEKLRGSEAPDLDSAREALERLFFNED
RYDLGDVGRHRMNARLDVDVDTDEKVLTKEDVVGIVRELIRLQNGESTADDIDHLSNRRV
KSVGEQLGSQFSLGLARMARTIKERMNLRDADKFTPKDLVNARTIESVINTFFGTNQLSQ
FMDQTNALAEMTHKRRMSALGPGGLTRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLML
SLCVHSTINDFGFLETPYRVVEDGRVTDRVEYLSAEEEDQATVAQANAPIGDDGHFERDE
VRCRHQGDFPIVEPEEVDYMDVAPNQIVSPSASLVPFLSHNDANRALMGSNMQRQGVPLL
RSDSPIVGTGLEGRVAKDSRSCVVAEGEGVVEYVDAERLVVRYDEEQDKTDLTFGEPVQE
YELTKFRRTNQGTCMNQKPIVQAGDRVEEGEVLTDGFAMEKGELALGKNVLCAFMPWHGY
NYEDAIVISERLVADDVYTSVHIEEFEHEVRDTKRGEEELTREIPNVSEEATKDLDERGI
VRVGAEITPGDIIVGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKAKPGMEGGVVI
DTRLFSRRELDPASKKMEEKRLENIESDHERKLADLNERFWEKFFALVEDATSAGLEDRE
GEVLLTEGADFEEDAFDEVDPSDLSTRAEFTEDEELNDQISTLLRNYKSRRRDIEGTTKR
QKHQVEMGDELPSGVVQMAKVYVARKKKIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDG
TPVDLVLNPLGVPSRMNLGQIYETLLGWAGDRLGVKYATPIFDGASLEDVGDELEKAGLP
RDGKVQLYDGRTGEPFDEKTTVGQIYMMKLEHLVEDKMHARSIGPYSLITQQPLGGKAQF
GGQRLGEMEVWALYAYGASNTLQEMLTFKSDDVEGRSEAYESIVKGENLPSPGVPESFNV
LVRELQGLGLEVTLD
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggctcatgggcctgcgccccccgacgacagacatgaatccccctgcttccgaggcccc
acgcacggtattcgcacccgtgccgtccggcgtgtcggatgttttgcgaacgcagtatat
tcacgcgagcgatacctacagcctatgccgacctttttaaacggagacatcaccaccccc
ggtcaccttgtggacccggatccgcgcgaaagctttgcggacattccggaggtgtgggat
tatccggacttcctggacgtccagctgaagacgttccacgactttgtgcaggacgacgtg
ccgcccgccgaccgggaggacgttggcctccaggcggtctttaacgagcacttcccgatc
aaggacaaccgggaccgctacacccttgagttcgtcaactacgagctcgacgccccgaag
cacacggtcgaggagtgcatcgcgcagggcctcacgtactcgattcccctgaaggccacc
ctccgcctcacgagcaaggaggaggaagggggcgaagaggccatcgaggcgatcgagcag
gaggtatacctggggacgcttccgttcatgaccgaccgcgggacgttcatcgtgaacgga
gccgaacgggtcatcgtctcccagctccaccgcagccccggtgcgttcttcgagaaggag
attcactcgaacggcacagagctgttcagtgcccgcgtgattcccttccgcggttcgtgg
atggagttctccacggacgttcgtgacgtgctgtgggcctacgtcgaccgcaagaagaag
gtgcccgtcaccacgctgcttcgtgcgctgggcttctccagcgacgaggagatcgtgaag
atgttcgatctggccgacgcggttgacatcggcgacgaagacgaattcgaagagcacctc
ggccgcgagctcgcaacgagcgtcacgatcgagaagacgatcgagatcgtcgacgaggac
accggggaagtggtcgacgaagagatggagcgcgaagtgctgctgcccgccgagcacgag
ctggaggagggggattgggaggagctcgacgagtacgacgtgagccgcctctatctcgtg
cgggaggatgttgaggacgaggcactcgacaaaagtacgctcgtggaaaccctccagaag
gactcctcgcacacggaggaggaggcccttgaagtcatttacgagaagctgcgtggaagc
gaagcgcccgatcttgactctgcccgggaggcccttgagcgactcttctttaacgaggac
cgttatgacctgggcgatgtggggcgccaccgcatgaacgcccggctggacgtcgacgtg
gacaccgacgagaaggtcctcacgaaggaggacgtggtcggcatcgtccgtgagctcatt
cgactccagaatggagagagcacggccgacgacatcgaccacctcagcaaccgccgcgtg
aagtccgttggcgagcagctcgggtcccagttctccctgggcctggcccgcatggcgcgc
accatcaaggagcgcatgaatctgcgggacgccgacaagtttacgccgaaggacctggtg
aacgcccggaccatcgagagcgtgatcaacacgttcttcgggaccaaccagctcagccag
ttcatggaccagaccaatgccctggccgagatgacccacaagcgccgcatgtcggcgctg
gggccgggcgggctgacccgcgaacgggccgggttcgaggttcgagacgtccaccacacg
cactacgggcggctctgtcccatcgagacgccggaggggccgaacatcgggctgatgctg
tccctctgcgtccactccacgatcaacgacttcggcttcctggaaaccccctaccgtgtg
gtggaggacggccgggtgaccgaccgggtcgaatacctctcggccgaagaggaggaccag
gccacggtggcccaggccaacgccccgatcggcgacgacggacacttcgagcgcgacgag
gtgcgctgccggcaccagggagacttccccatcgtcgagccagaggaggtcgactacatg
gacgtggcgccgaaccagatcgtctcgccctcggccagcctcgtgcccttcctctcccac
aacgacgcgaaccgcgcgctgatgggatcgaacatgcagcggcagggtgtgccgctgctc
agaagcgactccccgatcgtcgggaccggtctcgagggacgggtggcgaaggactcccgc
tcctgcgtggtggcggagggcgagggcgtcgtcgagtacgtagacgcggagcgcctcgtc
gtgcgctacgacgaggagcaggacaagaccgacctaaccttcggcgaaccggtccaggag
tacgagctgaccaagttccgccggaccaaccagggcacatgcatgaaccagaagcccatc
gtccaggcgggcgaccgcgtggaggagggcgaggtcctcaccgatggcttcgcgatggag
aagggcgagctcgccctcggcaagaacgtgctctgcgccttcatgccctggcacgggtac
aactacgaggacgccatcgtcatcagcgagcgcctcgtggccgacgacgtgtacacctcg
gtccacatcgaggagtttgagcacgaggtgcgcgacacgaagcgcggtgaggaggaactg
acccgcgagattccgaacgtgagcgaggaggcgacgaaggacctcgacgagcggggcatt
gtccgcgtgggggccgaaatcaccccgggcgacatcatcgtcgggaagattacgccgaag
ggcgaaaccgaccccacgccggaagagaagctgctccgcgccatctttggggacaaggcc
ggcgacgtgaaggacgcctccctgaaggccaagccgggcatggagggcggtgtcgtgatc
gacacgaggctctttagccgccgtgagctcgacccggcctccaagaagatggaggagaag
cgcctcgaaaacatcgagagcgaccacgagcgcaagctggcggaccttaacgagcgcttc
tgggagaaattctttgccctggtcgaggacgcgacgagcgccggcctcgaagaccgtgag
ggcgaggtcctcctcaccgaaggcgcggactttgaggaagacgcctttgacgaggtcgac
ccgtccgacctgagcacccgtgccgagttcaccgaggacgaggagctgaacgaccagatc
agcacgctccttcggaactacaagtcgcgccgccgcgacatcgagggcaccaccaagcgc
cagaagcaccaggtcgagatgggcgacgagctgccctccggcgtcgtgcagatggcgaag
gtctacgtggcgcggaagaagaagattgaggtgggcgacaagatggccggacgccacggc
aacaagggcgtgatcgcgaagattgcgccggtcgaggacatgccgttcctcgacgacggc
acgcccgtggacctggtgctaaacccgctcggggtgccgtcccggatgaacctgggacag
atctacgagacgctcctcggctgggcgggcgaccggcttggggtcaaatacgcgaccccg
atcttcgacggcgcgtcgctcgaagacgtgggcgatgagctggagaaggccggcctcccc
cgcgacggaaaggtgcagctctacgacgggcgcaccggcgagccgttcgacgagaagacg
acggtgggccagatctacatgatgaagctggagcaccttgtcgaggacaagatgcacgcc
cggtccatcggcccctacagcctcatcacgcagcagccgctgggcggaaaggctcagttc
ggcgggcagcgccttggagagatggaagtctgggccctgtacgcttacggggcctccaac
acgttgcaggagatgctcaccttcaagtccgatgacgtcgagggccgctccgaggcctac
gagtcgattgtgaagggcgagaacctgccctcgcccggcgtccccgagagcttcaacgtg
ctcgtccgggagcttcaggggctcgggctcgaggtgacgctcgactaa
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