Streptomyces rubrolavendulae: A4G23_03322
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Entry
A4G23_03322 CDS
T04616
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srn
Streptomyces rubrolavendulae
Pathway
srn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A4G23_03322 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srn03021
]
A4G23_03322 (rpoC)
03400 DNA repair and recombination proteins [BR:
srn03400
]
A4G23_03322 (rpoC)
Enzymes [BR:
srn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A4G23_03322 (rpoC)
Transcription machinery [BR:
srn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A4G23_03322 (rpoC)
DNA repair and recombination proteins [BR:
srn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A4G23_03322 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AOT60447
UniProt:
A0A1D8G4T1
LinkDB
All DBs
Position
3856142..3860038
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRQRDLPSLEAHVSVERQQIEQRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVRGE
GRAFNSTAEAIMAFDARELSLQAKVDIRFPIGSVPPRGWTPPVDEEGETGWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYTVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFYWAT
RSGVTVAISDVVVPEAKKEIVRGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNENFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLRIGVTE
DGVLRKADDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDQLIAAGVEQVKTRSVLT
CESAVGTCAYCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQ
GLPRVVELFEARSPKGMAPIAEASGRVRIEETEKTKKIVITPDDGSDETAYPISKRARVL
VGEGDHVQVGQKLTVGTENPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEIII
RQMLRRVTIIESGDAELLPGELVERSRFEQENRRVVQEGGHPASGRPQLMGITKASLATE
SWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEEA
KAAMYSAVGYDDIDYSPFGAGSGQAVPLEDYDYGPYNQ
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgcggacgacatc
cggcagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcggtgtggcgtc
gaggtcacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctcgccgccccc
gtcacccacatctggtacttcaagggcgtcccgtcccggctgggctacctgctggacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgccagcgcgacctgccgtcgctggaggcccacgtctccgtcgagcgccag
cagatcgagcagcgccgcgacgccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtccgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgtgcccagcgcgagatcgaccgcctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccggttcggcacctacttcgacggctcgatgggcgccgccgcg
ctgcagaagcggctggagtccttcgacctcgacgaggaggccgagaagctccgcgagatc
atccgtacgggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctccagaccagcaacagccccaagggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgccgcggccgcccggtcacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggcaag
cgcgtcgactactcggcccgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctggaagaggtcatcgcggagcacccggttctgctgaaccgc
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcgcgcatcctgatgctc
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgaggaggagcgcgaggtcaggggtgag
ggccgcgccttcaactcgaccgccgaggcgatcatggccttcgacgcccgcgagctgtcg
ctccaggcgaaggtggacatccgcttcccgatcggctccgtcccgccccgcggctggacc
ccgccggtcgacgaggagggcgagacgggctggcagcagggcgacagcttccggctgcgc
accaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tacacggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccg
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttctactgggccacc
cgctccggcgtcaccgtcgccatctcggacgtcgtcgtcccggaggcgaagaaggagatc
gtccgcggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacccaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggccatgaacgagaacttcccgaagacgaacccgatcttcatgatggtgaactcg
ggcgctcgaggaaacatgatgcagatgcgccagatcgcgggtatgcgcggtctggtgtcg
aacgccaagaacgagacgatcccgcgtcccatcaaggcgtccttccgcgagggcctgtcc
gtgctggagtacttcatctccacgcacggtgcccgcaagggtctggccgacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatc
atccgcgaggaggactgcggcaccgaccgcggtctgaagctgcggatcggcgtgaccgag
gacggcgtgctgcgcaaggcggacgacgtcgagacgtccgtgtacgcgcggatgctcgcc
gaggacgtcgtcgtggacggcaaggtcatcgcgccggccaacgtcgacctgggcgacgtg
ctcatcgaccagctcatcgcggcgggtgtcgagcaggtcaagacccgctcggtcctcacc
tgcgagtccgcggtcggcacgtgcgcctactgctacggccgttcgctggccaccggcaag
ctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagcccggc
acccagctcacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacgcag
ggtctgccgcgtgtcgtcgagctcttcgaggcccgttcccccaagggcatggcgccgatc
gccgaggcctccggccgcgtgcggatcgaggagaccgagaagaccaagaagatcgtcatc
accccggacgacggcagcgacgagacggcgtacccgatctccaagcgcgcccgtgtcctg
gtcggcgagggcgaccacgtccaggtgggccagaagctcaccgtgggtaccgagaacccg
cacgacgtgctgcgcatcctcggccagcgggccgtccaggtccacctggtcggcgaggtg
cagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatcatc
cggcagatgctgcgccgggtgacgatcatcgagtccggtgacgcggagctgctgccgggc
gagctcgtggagcgctcgcgcttcgagcaggagaaccgtcgcgtggtccaggaaggcggc
cacccggcctccggccgtccgcagctgatgggtatcaccaaggcgtcgctggcgacggag
tcgtggctctccgcggcgtccttccaggagacgaccagggtcctgacggacgcggcgatc
aacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctcatc
ccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagccgaccgaggaggcc
aaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggcgcc
ggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
DBGET
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