Sinocyclocheilus rhinocerous: 107707469
Help
Entry
107707469 CDS
T04916
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107707469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107707469
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107707469
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107707469
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107707469
NCBI-ProteinID:
XP_016366967
LinkDB
All DBs
Position
Unknown
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASPDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVTSTSHTPSIQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KAPQPGLASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPE
ELLPIVTTDCVPFTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINININIP
LLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLE
QHLHAIPPALAMNPQTQAIRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSGADPDL
LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHITEADLFHTIETLMRTNAHSRA
NAPEGTPSLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLR
EWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQ
QLPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEASNTVTKINLLNKVGMLTMVLGIVVG
VLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcagatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggattttagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttaaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctgctctcccatcttctgttcggtcagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgcttgcaccactgttgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggtgaattaaataagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcctgatgagtgcaggaacataatcctgcagtat
ggtgtgcgagaggtgactgccagtcaggtggccagagtgttgggcatgatggcccgcact
cactccgggctgtccgatggcatcggcctacaatccatctcaaatccagtgggcggtggg
atctggagtgatgggaaggacaagagtgacggctctcaggctcacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagctggaccacccaggcttcctgatccgtgacagtaaggggcttcagatagtggtctat
gggatccagaggggtctgggaatggaggtgttcccggtggatctcatctacagaccatgg
aaacatgcagaaggacagctgtcattcattcagcactcgctgatgagtcctgaagtgttc
tgctttgccgactatccctgtcatactgttgccattgacatcctgaaggccccacctgag
gatgacaacagagaaatagccacatggaagagcttggacctagtggagagcctcttgcgc
ctctctgaagttgggcattatgaacaggtgaagcagctcttcagcttccccatcaagcac
tgcccggacatgctagtgctggcacttctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctctaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggccaagctatctcgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcatggggaaccattcatccaggcatgtgtcacattc
ctgaagagacgctgtccctctatcatgggtggtttggccccagagaaagaccagccaaaa
agtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgactatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctcccagc
accagcagcttagatgctatctcacctgtgcagatggatcctctctctgcgatgggctct
ttgagtctaggtgtcacgtccacctcccacaccccgagcatccaaggattccccagcctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgcccaac
ccgaaccccagcacagctttcccaggaatcaaccccctctcttctcagctccaaggtcct
ctgagcacaagcttgactgggattggctcaggtttgggcatgcccgccgtcagcagcgac
cccttcggcactaggaagatgagcacaccggggctgaaccctcccaccttccagcagact
gacctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgag
gcaaatagctacttccagcgtatctacaaccatccgccgcaccccacaatgtccgtggat
gaggtgctggaaatgctgcagagatttaaggactcaaacatcaagcgagaacgggaagtt
tttaactgcatgctgaggaatctgttcgaggagtaccgattcttccctcagtatccagat
aaagaactgcacatcaccgcttgcctcttcggggggatcattgagaagggcctggtcacg
tacatggcgctgggcttggctttacgatatgtcctggaagccttacgcaaacctttcgga
tcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaaggac
tatccccagtactgtcagcacttggcgtcaatagcccatttcctgcagtttccgcaccat
ttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaaggc
tccattactacccctggcagcctggctttagcccaggctcaagctcagtctcagaccccc
aaagccccacaacctggcctggccagcaccttagtgaccacagccaccacaaccaccacc
gctgccaaaaccacaaccatcacgagacctacagctgttggaccgaagaaagacgtgcca
ccttcaatcaacaccacaaacattgacaccttgttagtggctacagaccagactgaaagg
atcgttgagcccccagagaatgttcaggagaagattgcgttcatcttcaacaacttgtcc
caatcaaacatgacccaaaaggtggaggagctgaaagagactgtaaaagaagaattcatg
ccctgggtctctcagtacctggttatgaagcgtgtcagcattgagcctaacttccacagc
ctgtattctaatttcctggacacactgaaaaacccagagtttgttaagatggttctcaat
gagacgtacagaaacatcaaggtccttcttacctctgataaggcagctgctaacttctca
gatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccctagctaaaaac
aaacccatcctgtacacagacctggagctgaaatctctcttgctagaggcttatgtaaaa
ggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagtctg
cggagtgtgatcttcagaccgcagaacccttggaccatgggcatcatgaatgtactggct
gagctccaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtgctctgc
aagaatctgtctttggatatcagtgagctgaaaccaggaaacctactgagagacaaagag
aagctgaagaacttggaggagcagctctctgcaccaaagaaagagaccaagcctcctgaa
gagctgcttcctatagttacaacagattgtgttccatttacagctgctccctcaactcca
gccaccaccacgacctgtacggccactgggccgcccacaccacagttcagctaccatgac
atcaatgtgtacgccctggctggcctggccccgcacatcaacatcaatattaatatccca
ctactgcaggcccaccctcagctgaaacagtgtgtaagaccagcaattgagcgtgctgta
caggaactggtgcacccagtggtggaccgatccatcaagatcgccatgaccacctgtgag
caaatagtcaggaaggacttcgcacttgactctgaggagtctcacatgcgtgtggccgcc
caccacatgatgcgtaacctgactgccggcatggccatgatcacctgcagagagccgctg
ctcatgagcatcgccaccaacctgaagaacagctttgctgcagctcttagggctcccaca
ccccagcagagagagatgatggaagaggcagctgctcgcatcgcacaggacaactgtgag
cttgcttgttgctttatccagaagaccgcagtggagaaagctggacctgagatggacaag
agactagcaactgaattcgagctgaggaagcacgctcgccaagaaggccgtcgctactgt
gaccccatggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaaggtc
ggtggagtagatcctaaacagctggctgtttatgaggagttcgcccgaaatgttccaggc
ttcctacccagtaacgacctgtctcagcccactggtttccttgcccaaccaatgaagcaa
caggcatggcccactgatgatgtggctcacatctacgataagtgcatttcggacctggag
cagcacctgcacgcaattccacctgcgctggccatgaacccgcagacccaggccatacgc
agccttctggaggccgttgtcttggctaggaactcccgtgatggcatcgctgccctgggc
cttttgcaaaaggctgtggagggtctgcttgatgccaccagtggtgctgatcctgatctg
ctgctgagctacagggagtgccatctgctggtgctgaaagccctacaggatggtcgtgcc
tacggcccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagatgaa
tacaagtacaacgttgaggccgtggagctcctcatcagaaaccacttggtcaacatgcag
cagtatgacttacacctggctcagtccatggagaacgggctcaactacatggccgtggca
ttcgccatgcagctggtgaagatcctgctggttgacgaacgcagcgtgagtcacatcact
gaagcggatctcttccacaccattgagacgctgatgaggaccaacgctcactccagagcc
aatgctcctgaaggaacccctagtttgccccagctgatggatgttgtccgctccaactac
gaggccatgatcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttct
caagcctctgaatacgatgacccaccaggccttagagagaaggcagagtacctgctgaga
gaatgggtcaacctgtaccactcggcagctgcaggaagagacagcaccaaggcattctct
gcgtttgttggccagatgcaccagcagggcatcctgaagaccgatgacctgatcactcgc
ttcttccggctgtgcacagaaatgtgtgtggagatcagttaccgtgctcaagctgaacag
cagcttccaaccaccagccccgccattatcagggccaagtgctaccataacctggacgct
tttgttcggctcattgcgcttcttgtcaaacactctggagaggcctccaacacagtcacc
aaaatcaacctgctcaacaaggttggaatgcttacaatggttctaggcattgtggtgggt
gtattgatccaggatcacgatgtgaggcagacagagttccagcagcttccgtaccacaga
atcttcatcatgctcctgctggagcttaacgcaccagagcatgtgctggagaccatcaac
ttccagacgctcactgccttctgcaataccttccacatcctgaggccgactaaagcacct
ggttttgtctatgcttggctggagctcatctcacaccgtatcttcattgccaggatgctt
gcacataccccacaacagaagggttggccaatgtatgcccagctgctgatagacttgttc
aaatatcttgcacccttcctaaggaatgttgaactcaacaaacctatgcaaattctctac
aagggaacacttcgtgtgctgcttgtcctgctacatgacttccccgaattcctgtgcgac
taccattatggcttctgcgacgtcatcccgcctaactgcatccagctgaggaacctgatc
ctgagtgccttcccccgcaacatgaggcttccagaccccttcacccctaatctgaaggtg
gatatgctgagtgagatcaacattgctccccgcatcctcactaacttcaccggtgtgatg
ccgtcccagtttaagaaggatcttgactcctacctcaagacccgttctcctgtcaccttt
ctttctgagctgcgcagcaacctgcaggtgtccaacgagccaggcaaccgctacaacatt
cagctaatcaatgctctggtgctgtacgttggaacccaggccattgcccacatccacaac
aagggcagcactccctccatgagcaccatcactcactcggctcacatggacatcttccag
aacctcgcagttgatctagacactgagggccgctatctgttcctgaatgcgatagccaat
cagctgcgttatccaaacagccacacacactactttagctgtaccatgctgtatctgttt
gccgaggccaacgctgaagccattcaagagcagatcaccagggtcctgctggagaggctg
attgtgaacaggccgcacccatggggtctgctcatcaccttcattgagctgatcaagaac
cctgcctttaagttctggagccatgattttgtgcactgtgccccagagatcgagaagttg
ttccagtcggtggctcagtgctgcatggggcagaagcaggcccagcaggtgatggaggga
acaggtgccagttag
DBGET
integrated database retrieval system
