Sinocyclocheilus rhinocerous: 107709439
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Entry
107709439 CDS
T04916
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx03030
DNA replication
srx03410
Base excision repair
srx03420
Nucleotide excision repair
srx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107709439
03410 Base excision repair
107709439
03420 Nucleotide excision repair
107709439
03430 Mismatch repair
107709439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srx03032
]
107709439
03400 DNA repair and recombination proteins [BR:
srx03400
]
107709439
DNA replication proteins [BR:
srx03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107709439
DNA repair and recombination proteins [BR:
srx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107709439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_7
AAA_30
Rad17
RuvB_N
AAA_16
BRCT_2
AAA_33
AAA_14
AAA_17
nSTAND3
AAA_18
DNA_pol3_delta
NTPase_1
RNA_helicase
AAA_19
TIP49
Motif
Other DBs
NCBI-GeneID:
107709439
NCBI-ProteinID:
XP_016369399
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MDIRRFFASTKPAAPKPSNGSTSTDEEQKKKQKSKTKVTSPTSNEKPSGKRKKRVIIDSD
SEEEKKKEKKTKRGTKETDAATVKKHPVTYVSDSDSKPKENGRAKGKKESDSGQAKQVKV
SSSKSPTTISKGGGKSSQSTISPKIGPTPPKQTPTSVMAFFGSSSVQRSDKKLVASTSTK
RKAPTQETEKLLSDEVIAKELQMDEDMELEKQMHDDEEFARTLAMLDEAPLPKKARVDSV
SPSKSSSHAISSDTKPKKDPSPKKSPVKTSSKLAQMKRRQEEVKEQREKDRSEKQIKFSP
KKEPISPTSSERAATPKSSVSTGMTKSRNFSTPKSDSAPNKTSPTKPENTSPEDLEKKRA
NSSAYRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKV
TGNISRKTTYLVLGRDSGASKTEKAESFGTKIINEDELLELIRTKPGKKSKYEIAAENKS
SKTRTPDSRGKPTPPSKKATPQGPRPNKRSPSEGKSKPGSASKSGTLGASRSEVKKSLSF
DQSKRASPVSHSTPESEGSSLLWVDKYRPRSLKSLIGQQGDQSCANKLLRWLQNWHKHHS
SNTKAPSAKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRS
KNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQ
SKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAIMSIAFKEGLKIPPPALNEV
ILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVCRKVFASGEETA
HMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDK
QIRSRQAWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAGKHRRIIQELASHM
SLKTLSSKEAMNLDYLPYLRSAILESLQSQGSEGASQSVKLMDDYDIIKEDVDNMMEISM
WGGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDPELIGELNGESQFQ
EEEEDNGVTADAMIKVDIKIAIQRLSFRLSVFYNHVDLNNICKGKFTQKCKFCHQLLTYM
LF
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaggttttttgcatccactaaacctgcggcccccaaaccttccaatgga
agcaccagcactgatgaagagcagaagaagaaacaaaaatcaaagactaaggtcacaagt
cccacatctaatgagaaaccatctggaaaacgaaagaaaagagtcataattgattcagac
tctgaggaagagaagaagaaggagaagaagaccaagaggggcactaaagagactgatgcc
gccacagtgaagaaacacccagtaacttacgtgtctgattctgattcgaaaccaaaagaa
aatggaagagctaaaggcaagaaagaatcagattcaggacaagcaaaacaggtgaaagtc
tcatccagtaaatccccaaccacgatctcaaagggaggggggaagagctctcagtctacc
atctccccaaagatcggaccaacgccaccaaaacaaacacctacttcagtaatggccttc
tttggcagctcaagtgttcagaggtcagacaagaaactagtggccagtaccagcactaag
aggaaggcacccacacaggaaactgagaagttgctcagtgatgaagtcattgcaaaagaa
cttcagatggatgaagacatggagttggaaaagcagatgcatgatgatgaggaatttgca
agaacattagccatgctggatgaagctcccttaccgaaaaaggctcgggtggactctgtc
tccccctccaagagcagctctcatgcaatttcctcagacaccaaacccaaaaaggacccg
tcccctaaaaagagtcctgtgaagaccagctccaaactggctcagatgaaaagacgacag
gaagaagtgaaagagcaaagggaaaaagataggagtgaaaagcagattaagttttctcct
aagaaagagccaatctcacccactagctcagagcgggcagccacgcccaaaagtagcgtt
tccacgggaatgacaaaatccaggaatttttccacgcctaaaagtgacagtgcacccaat
aaaacctcaccaacaaaaccagagaatacaagtcctgaggatctagagaaaaaacgggca
aattcatcagcctaccgtaactatttgaaccgagaaggaccacgagcactggggtctaaa
gagataccacagggagcagagaactgcctggagggttgtgtgtttgtgttgaccggtgtg
ttagaatctatggagagggatgatgctaagtcactaatagagcgatatggcgggaaagtc
acaggaaacatcagccgtaaaactacttaccttgttctgggacgagacagtggagcctca
aagactgagaaggcggagagttttggaactaagatcattaatgaagatgagttgttggaa
ctcataagaaccaaaccaggcaagaagtctaaatacgagattgcagcagagaataaatcc
tctaaaacaaggactccagattctagaggcaaacccactcctccatccaagaaggccaca
ccacaagggccccgccccaacaagagaagcccttcagaggggaagtctaagcctggctct
gcttctaaatctggaacacttggggcctctcgttcagaggtcaaaaagagtttgagcttt
gatcaatccaagagagcatcccctgtatcccactctacccctgagagtgagggcagcagc
ctgttgtgggtggataagtaccgcccccgtagtctgaagagcctgattgggcagcagggg
gatcagagttgtgctaacaagcttctgcgttggttacagaactggcataaacatcacagc
agcaatacaaaagccccatcagccaaatttggaaagtttgggagtaaagatgacggttct
ggatttaaggctgcattgttatctgggcctcctggtgttgggaagaccactactgctgct
ctcgtctgtgaggagttgggttacagctacgtggagatgaatgcgagctgcacccgcagt
aagaacagcttaaaggaagtgatcgcagaatcactcaacaacaccagcattaagaacttc
tataccggtgcatctcagacagtgagcagtaaacatgtcctcataatggacgaggtggac
gggatggcaggaaatgaagacagaggaggaatacaggagatgattggtttgataaaacag
tcaaagattcccattatctgcatgtgtaatgaccgcaatcatcagaagatccgctcgctg
gctaactactgctacgacctgcggtttcagagaccccgtgttgagcagatcaagggggct
ataatgtctatagctttcaaagagggtctgaagatcccacccccagcacttaatgaagtc
attctggcgtccaatcaggatattcggcaggtactgcataatctgagcatgtggtctgct
aaagacaaagtcatgacctatgaccaggccaaagctgatgctaacaatgctaagaaggac
atgaaactgggtccatttgatgtgtgtcggaaggtgtttgcttcaggagaggaaaccgcc
cacatgtctttgattgacaaatcagaccttttcttccatgattactctttagcaccacta
tttgttcaagaaaactacctgcatgtccgaccagctgctgcagggggaaatctgaagaat
catttggtgttgttgagtaaaacagcagacagcatttgcgatggagatttagtggacaaa
cagatccgctccagacaggcatggtctctgcttcccacacaggcgatttatgcgagcgtg
ttgccgggggagctgatgcggggttatatgagtcagtttccgacttttcccagctggttg
ggcaagttctcatcagctggcaaacacaggcgcatcatacaggagcttgcttcacacatg
agcctaaaaacgttaagtagtaaggaagccatgaatctggattacctgccgtatttgcgc
tcagcaatattagagtctcttcagtcgcaaggttcagagggagccagtcagagtgtgaag
ctcatggatgattacgacatcatcaaagaggatgttgataacatgatggagatcagcatg
tggggcggacagccggatccttactctaaactagactccaaggtgaaagctgcatttaca
agagcctacaataaggaatcccatcttacgccgtactctttacaagtggttaagaaaagc
cgtaaaggtgctgttgaccccgagcttataggagagcttaacggtgaatctcagtttcag
gaagaggaagaagacaatggggttaccgcagatgcaatgataaaggtagatatcaaaata
gcaattcagcggctctcgtttcgactgtccgtgttttacaatcatgttgacctcaataac
atctgcaagggcaagttcacccagaaatgtaaattctgtcatcagttacttacctacatg
ttgttttaa
DBGET
integrated database retrieval system
