Sinocyclocheilus rhinocerous: 107722164
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Entry
107722164 CDS
T04916
Name
(RefSeq) collagen alpha-2(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107722164
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107722164
09142 Cell motility
04820 Cytoskeleton in muscle cells
107722164
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
srx00535
]
107722164
Proteoglycans [BR:
srx00535
]
Extracellular matrix (ECM) proteoglycans
Others
107722164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107722164
NCBI-ProteinID:
XP_016385905
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MDRFFIIFRSLVLLQVLCLALSQVTGPPGQQGPTGPPGPAGTPGADGIDGEKGPPGPPGP
AGQKGESGESGPDGSPGEDGIDGLIGAKGERGPRGNPGPKGQPGPGGSQGRPGPGLPGLP
GAAGPIGLPGQIGTTGPKGDMGSPGAPGLTGPPGKPGPPGKFLGVEEGSADFQCPTNCPP
GPKGPQGLQGVKGHKGRAGVLGDPGSIGKVGVKGEVGISGEQGIPGPPGPQGLRGYPGMV
GPKGETGPRGYKGILGPIGIPGRPGEEGPQGPPGEPGDKGDMGGSGIRGPQGVVGKKGEN
GLPGIDGKDGTPGIPGIKGATGQNGRPGAPGLQGDAGLPGMPGAKGEIGIKGETGTRGLM
GMQGPPGPQGEPGPPGEAGMEGVPGPKGDRGERGPVGPPGIVGLPGSKGERGPMGVPGAQ
GLTGTKGDKGFQGKVGSKGDVGDPGVEGLAGEKGEKGQSGEPGPKGQQGVTGDQGNNGPT
GDPGKPGDQGPAGLPGPRGLHGERGVPGMPGIQGTPGRDAIDQHIIDVVLKMLQEKLAAV
AVSSKRAVLGGAGVMGPPGPPGPPGPPGPQGPHGLLGGRGIPGIIGGPGQIGNTGLKGKR
GAKGERGDPGRPHPGQPGPPGLPGPPGLDGVARDGRPGERGPQGAAGEPGRPGKAGPLGL
PGFCEAAACLAASAYTSPRLQEAGTVKGPST
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggatagattcttcatcatcttcagaagcctggtcctgttgcaggtgctctgcttggcc
ttatcacaagtgaccggtccacccggacagcagggccccactggtccccctggccccgct
ggaactcctggtgccgacggcattgatggtgaaaagggtcctcctggacctcctggacca
gcaggtcaaaagggagagtcaggtgagtctggtcctgatggatctccaggggaggatggc
attgatggtttgattggggctaagggtgagaggggccctcgtggtaatcctggaccaaag
ggtcagccagggcctggtggatcacaagggcgaccgggacctggactgcctggacttcct
ggagcagcaggccccattgggcttcctggacaaattgggactactgggccaaagggtgac
atgggaagtcctggagctccaggattaaccggacctccaggaaagccaggtccaccagga
aagtttttgggtgtagaggaaggcagtgctgacttccagtgtccaaccaactgtccacct
gggccgaaaggtcctcagggcctacagggagtgaagggacataaaggtcgcgctggggta
ttgggagatccaggaagcatcggaaaagtgggtgtaaagggtgaagtgggcatctccggt
gaacaaggaataccaggccctccaggtccacagggtctgagagggtatccaggaatggtg
gggcccaaaggcgagacgggaccacgtggttataaaggaattttaggaccaatcggcatc
cctggacgccctggtgaagagggaccccaaggaccacctggagagcctggtgacaagggc
gacatgggagggagtggaatacgagggcctcagggagtggtcggaaagaagggagagaac
ggtcttccaggaattgatggaaaagatggtactcctggcatcccaggaataaagggagct
acaggacaaaatggaagacctggagcccctggtcttcagggagacgctggtttgcctggt
atgcctggagccaagggtgaaattggaattaagggtgagacaggaacccgaggcttgatg
ggaatgcaaggtcctccaggacctcaaggagagcctggtcctccaggtgaagctggcatg
gagggagtcccaggtccaaagggcgacaggggcgaaagaggaccagttgggcctcctggt
attgttggcttgcctggcagtaaaggagagaggggacccatgggcgtcccaggtgctcag
ggtctaactggaactaagggtgacaagggattccaaggcaaagtgggatcaaagggagac
gttggtgatcctggtgtagagggattggctggggagaaaggagagaagggacaatctggg
gagcccggacctaagggacagcaaggtgtgaccggtgatcaagggaacaacggccctacc
ggagatcccggtaaaccaggagaccagggtcctgcaggcttacctggtccacgtggcctg
catggagaaagaggagttccagggatgccaggaatacaaggaacacctggtcgtgatgct
atagatcaacacatcattgacgttgtcctgaagatgcttcaagagaagttagcagcggta
gcggtgagctctaagagagccgtgctgggtggagcaggtgtgatgggccctccaggtcct
ccaggaccacctggacctccaggacctcagggtcctcatggactgctaggcggccgtggc
attcctggcataatcgggggcccaggccagataggaaacactggtcttaaagggaagagg
ggtgcaaagggagagagaggagatcctggacgaccacatcctggccaaccgggaccacct
ggactgccaggtcctccaggtcttgacggtgtggctcgtgacggtaggccaggcgagcga
ggacctcagggtgcagcgggtgagccaggccgtcctggaaaggctggtcctctcggtctt
cctggattttgtgaagcagctgcatgtttggcagcatccgcctacacttctcccagatta
caagaggcgggaacagtaaagggcccatccacttaa
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