Sinocyclocheilus rhinocerous: 107727315
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Entry
107727315 CDS
T04916
Name
(RefSeq) collagen alpha-2(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107727315
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107727315
09142 Cell motility
04820 Cytoskeleton in muscle cells
107727315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
srx00535
]
107727315
Proteoglycans [BR:
srx00535
]
Extracellular matrix (ECM) proteoglycans
Others
107727315
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107727315
NCBI-ProteinID:
XP_016392645
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search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NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaggacagatgcacagaggagtcctggcagtaaaggagatcgaggagagattggactg
ccaggacagaggggactgcaggggcccccgggaccaatgggacctatgggccccatggga
ccacgaggaccagtgggagaaagaggtctccctggtttccctggacctgccggaccccct
ggaccagaaactgttgggcctccaggactcccagggaagcctggtactccaggggacgag
ggaaacatcggaccagagggtcttcctggaccaaggggaggaattgggctcccaggccca
caaggacctccaggatcaccagggccacaaggcgctgggaaccctgagggaagtggggag
actcagtgccagacaacatgtccagctggaccgcagggaatgcctggtctgccggggatg
aagggacatcgaggtcttccaggtgtggacggtgtgccaggtacccaaggtgaaaaggga
gagcgaggggccgctggtgagccaggtcctcctggacgtccaggagatgatggtcagcga
ggaccaattggattccctggaactcatggtgataaaggagatcggggtcctcctggattc
aacgggatcccaggacccactggaccaccaggatcaccacagtgccagacaacatgtcca
gctggaccgcagggaatgcctggtctgccggggatgaagggacatcgaggtcttccaggt
gtggacggtgtgccaggtacccaaggtgaaaagggagagcgaggggccgctggtgagcca
ggtcctcctggacgtccaggagatgatggtcagcgaggaccaattggattccctggaact
catggtgataaaggagatcggggtcctcctggattcaacgggatcccaggacccactgga
ccaccaggatcaccaggtgttgaaggcatcagagggcgacagggacatcctgggcctaaa
ggagatgatggtgcgattggagccccgggagagaaaggagctcctggagccaagggtgac
actggtgagccaggaaagcatggatctgagggagcaccaggagcttcaggagagaaggga
gagccaggtttgcccggaaccattggtgtcagaggaattgtgggaattccaggtttacca
ggaaaacagggactcgtggggcctgcaggccaaaagggtgaaattggcactgtaggactg
actggtccagttgggcttcctggtaaagatggagcacctggaccaccaggagaagatgga
actccaggagccaaaggaacctctggtgaaccaggaaagcatggtccagttggcccaacg
ggcccgcagggaatccagggagataaaggtgatcaaggactcatgggccctcgtggaatc
aagggtcacacaggtcataaaggagaccagggcccaatgggtcctgttggtcccaaagga
agtgagggagatccaggtgttgtaggagaaccaggcgagaagggtgatcaggggcctccg
ggtattcctggaatcaagagtgatcgtggagagaaaggccagagaggagctacaggagct
gatggtcgtccaggacagccaggccacgagggtctgaccggaccgcagggagccagaggt
ctggagggggaacgaggactatcaggaccccctggtcccagaggtctacctgggcctaag
atgagtgacgagaagatccgtgagatttgttcagctgttgttgaagagcatttagatgcc
tacaagaaggaagtagccaagaagcctcttgccattgtagcccctggaactccaggactc
atgggaccacctggactaccgggaccagcaggtcctgctggagaagccggacccagagga
atcatgggccccaagggacctcaaggatactacggtcttcctggaaaaccaggagccaaa
ggtgatgcaggacaaaaaggtgacaagggagatactggaattggaattccaggaattcct
ggagaacccggacctcaaggaccagctggcaagcctggcatcggtaaggacggtcaggat
ggggccagaggagacgccggtgtgcctggaaccccaggaacccttggagccagaggacct
ccgggcgcccctggtctttgtgatccttcaaactgctttaggcctcaacctctttacatg
gttggcgggaagaggtctgtcaacatcaagggtccatga
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