Sinocyclocheilus rhinocerous: 107747272
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Entry
107747272 CDS
T04916
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
srx
Sinocyclocheilus rhinocerous
Pathway
srx04510
Focal adhesion
srx04512
ECM-receptor interaction
srx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107747272
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107747272
09142 Cell motility
04820 Cytoskeleton in muscle cells
107747272
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
srx00535
]
107747272
Proteoglycans [BR:
srx00535
]
Extracellular matrix (ECM) proteoglycans
Others
107747272
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107747272
NCBI-ProteinID:
XP_016417223
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MALAAGVRGPFLLILLEITIICTAQRAGAGPPGPPGVPGIDGIDGERGDPGEDGSAGPDG
DLGKPGSAGLPGLPGADGLTGPIGELGLDGPPGQKGEPGKPGPRGGAGVGPDGPIGQPGP
GGLPGEQGKVGLPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCSNACPPGAPGHPGLPG
MKGHKGVKGEAGEPGKQGHKGEEGDQGAIGEVGAQGPNGSQGIRGATGMIGSKGETGPRG
VDGDPGPQGVAGAMGDRGQRGVMGETGPKGEQGPQGTRGNTGLPGPKGDSGFPGVDGREG
IPGMPGAKGAAGKPGSPGEVGLQGLPGLPGSPGPKGGGGEKGNSGQPGLIGTMGSAGKPG
ERGEQGEFGPIGPIGQPGDRGEHGPPGPMGKPGARGPKGDLGLPGLPGPPGLPGIKGDRG
GAGEPGPKGEQGAQGDEGTPGDKGDVGDPGQSGAKGEVGNQGDPGNRGPEGARGQPGIEG
PPGSPGPRGMQGNRGAPGPRGTQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESG
AVGLPGRPGPPGPPGPSGDSGFPGHAGARGLPGLKGPLGLLGLKGPKGEMGDRGDRGPTS
RGPKGMPGPPGLPGEPGKPGYGQDGRDGERGPPGAPGQPGVPGPPGSAGPPGYCDPSACN
LSAGAAHQSLKDSSMKGPGGN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggctctcgctgcaggagtgcgtgggccctttttactgattttgttggagataaccatc
atttgcacggcacagagggctggagccggccctcctggtcctcccggtgtgcctggaata
gacggtattgatggcgagagaggtgaccccggtgaagatggttcggctggtcctgatgga
gatcttggaaaaccaggttctgctggacttcctggattacctggagctgatggattgact
ggccccataggagaactaggcctcgatggccccccaggacaaaagggagaacctggcaaa
cctggacccagaggaggggcgggtgttggacctgatggaccaattggacaaccaggacca
ggaggacttccgggtgagcagggaaaagtaggactccctggagccatgggtgtgagaggg
ccacagggaccccgtggaccaacaggcccccgtggtgctgcagggatgctgggtggaaca
atggaactgtgctctaacgcatgcccacctggtgctcctggtcatcctggcttgcctgga
atgaagggtcataaaggggtgaaaggagaagctggagagcctggaaaacaaggacacaag
ggagaggagggagatcagggggcaattggagaggtcggagctcaaggcccaaatggatcg
cagggaattcgaggtgccactggtatgattggctccaaaggagaaacggggcctcgaggt
gttgatggggaccctggacctcagggtgttgcaggagccatgggggatcgaggccaaaga
ggagtaatgggagaaactggccctaaaggcgaacagggacctcaagggacaagaggcaac
actggtcttccagggccaaagggagacagtggttttccaggtgtggatggacgtgaggga
atccctggcatgccaggtgccaagggtgctgccggaaaacctggaagccctggggaagtt
ggacttcaaggactccctggtttaccaggaagcccaggaccaaaaggtggaggtggagag
aagggtaattcaggacaaccgggcctcatcggtactatgggatctgcaggtaaaccgggt
gaacgtggagaacaaggagaatttggacccattgggcctattggacaacctggagaccga
ggagagcatgggccacctgggccgatgggaaaaccaggagccagaggtcctaaaggtgac
ttgggcttgcctggacttcctggaccaccgggcctgccaggaataaaaggagataggggt
ggagcaggagaacctggaccaaagggagaacagggcgctcaaggtgacgagggaacacca
ggagacaagggagatgttggtgaccctggccaatctggagctaaaggcgaagttggtaac
cagggggatccgggtaatagaggaccagagggtgcccgtgggcagcctggcattgagggg
cctcctggtagtcctggaccacgtggcatgcaggggaacagaggagctccaggacctcgt
ggcacccagggaccagcgggtaaagaaccaagtgatcaacacatcagacaagtgtgcatg
cgcgttatgcaggagcagctggcccagttggctgccagtctgaggagaccagagtctgga
gcggtcggactgccaggcagacctggtccccctggtcctcccggaccctcaggtgacagc
ggcttccctgggcatgctggtgcaagaggactcccgggactcaaagggcctctgggactt
ttgggtctcaaggggccgaaaggtgagatgggagacagaggggacaggggacctacaagt
cggggacccaaaggcatgccgggacctcctggactaccaggtgaacctggaaaaccagga
tacggtcaagatgggcgtgatggagaacggggtccacctggtgccccgggtcagccaggc
gttcctggacctcctggttcagcaggaccacccggttactgcgatccttcggcctgtaat
ctgagcgcaggtgccgcccaccagtccctcaaagactctagcatgaagggaccaggcgga
aactaa
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