KEGG   Sinocyclocheilus rhinocerous: 107753862
Entry
107753862         CDS       T04916                                 
Name
(RefSeq) collagen alpha-1(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx04510  Focal adhesion
srx04512  ECM-receptor interaction
srx04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:srx00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    107753862
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    107753862
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107753862
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:srx00535]
    107753862
Proteoglycans [BR:srx00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   107753862
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 107753862
NCBI-ProteinID: XP_016425619
LinkDB
Position
Unknown
AA seq 687 aa
MAHAGALRASLLLILLQLVLIISAQRGPFGPRGPPGPPGLPGFSGVDGIDGDRGPGPGPD
GPPGLDGDNGKDGLNGLPGKPGADGLTGPRGAPGPVGPPGQKGEPSEPGPRGAIGVGEDG
EAGADGEDGLPGELGKAGPPGSRGPRGPVGDPGLAGPRGPPGVWDGKELCPNACTSGLNG
YTGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGAPGEPGAQGLPGPQGLRGITGMMGPKG
DRGLRGNVGDLGPQGIQGAPGDRGQRGKVGETGPKGAQGPRGLQGLLGLPGPKGETGLPA
VDARDGIPGLPGVKGLPGKVGSPGEAGLQGFPGLPGISGAKGHMGEKGNTGDPGVAGLIG
NNGKTGERGEQGEVGPVGPRGGPGERGVRGPDGSAGSPGARGAKGDPGLPGLPGPAGFIG
QKGDRGAVGLTGPKGEQGPPGEEGTPGDKGDVGDEGEPGEKGSTGKPGEAGNKGPEGGRG
QPGPEGTAGEPGPRGMQGDSGVPGLPGAQGRPGRAPIDEHIKQVCMRVLHGQLAQLAASL
TRPESGISGLPGPPGPPGPPGPGGDNGFPGHPGSRGLPGLKGPLGLIGRKGPKGDQGDRG
DRGPTVEGSKGIPGPPGLPGDPGKLAYGSNGRDGLRGPAGAPGMPGVPGPPGPPGPNGYC
ESSQCVLQAVASPISVKESSVKGPDGL
NT seq 2064 nt   +upstreamnt  +downstreamnt
atggcgcacgccggggctctccgcgcgtcgctgctgctgattttactgcagttagtcctg
atcatctcagcacagagggggccatttggtccaagaggaccacctggacctccagggctt
cctggtttttctggtgttgacggcattgatggtgataggggacctggccctggcccagat
ggccccccaggccttgatggggacaatggcaaggatggattaaatggccttccaggaaaa
ccaggagcggatggtttgactgggccccgtggtgcccctggccctgttggccctcctgga
caaaaaggtgaacctagtgagccgggaccaaggggagccattggtgttggagaggatggt
gaagctggtgctgatggggaagatgggttacctggagagctgggcaaagctggacctcct
ggaagtcgtggaccgagaggtcctgttggtgatccaggactggcagggcccagaggccct
cctggagtctgggatggtaaggagctgtgtccaaatgcctgtacttctggcctgaatggt
tacacaggtcttccaggcatgaagggccacaaaggtgtcaaaggtgaatcaggtgaacca
ggaaggcaaggacataagggtgaagaaggagaccagggagcacctggagagccaggagca
caaggccttcctggtccacagggtctcagaggaatcacagggatgatgggccctaaaggg
gacaggggactccgtggaaatgttggcgacctgggccctcagggtattcagggcgctcct
ggtgatcggggtcaaagaggaaaagtaggtgagactggaccaaaaggagctcagggacct
cgggggttgcaaggacttttgggtttacctggaccgaaaggagagactggtctgcctgcg
gtggatgctcgtgacgggattccagggctgcccggagtgaagggtcttcctggaaaagtt
ggctcgcctggtgaggctggacttcagggatttccaggtttgccaggcatttcaggagca
aaaggtcacatgggtgaaaaaggaaatactggtgatccaggtgtggcaggtctgattgga
aataatggaaaaacaggtgaacgtggcgagcagggagaggtgggaccagtcggcccaaga
ggtgggccaggtgagagaggagtgagaggtcctgatgggtctgcaggctcaccaggtgca
aggggtgctaaaggagatccgggccttcctggtcttccagggcctgctggcttcatcggg
cagaaaggcgacaggggcgctgttggtctaactggtccaaaaggagagcaaggaccacct
ggtgaagagggaacacctggagacaaaggagatgttggtgatgagggagagccaggcgag
aaaggatcgacaggaaaaccaggagaggcaggaaataaaggtccagagggtgggcgtggc
caacctggacccgagggcacagctggagagcctggcccaagaggcatgcaaggagacagt
ggggtacctggactgcctggggcacagggacgaccaggccgagcacccatagatgagcac
atcaagcaggtctgcatgagggttttgcacggacagctcgcccagttggcagccagtctg
acgaggcccgagtcgggcatctctgggttgccaggtcctcctggtccccccggccctcca
gggcctggtggagacaatggcttccctgggcatcctggaagcagaggactgccgggtctc
aaagggcccctggggctcatagggaggaaagggcccaaaggtgaccaaggtgacagggga
gatagagggcccacagtggaggggtctaaaggaatacctggaccaccagggctcccaggt
gaccctgggaaactagcatatggcagtaacgggcgtgacggtctgagaggaccagcaggt
gctcctggaatgccaggtgtgcccgggccaccaggtccccccggccctaacggatactgc
gagtcatctcagtgcgtgcttcaagcagttgcgagtccgatatctgtcaaagagtccagc
gtgaagggaccagatggtctatga

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