Serratia plymuthica S13: M621_06345
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Entry
M621_06345 CDS
T02716
Name
(GenBank) endoribonuclease SymE
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
sry
Serratia plymuthica S13
Pathway
sry03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M621_06345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sry03400
]
M621_06345
Enzymes [BR:
sry01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
M621_06345
DNA repair and recombination proteins [BR:
sry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
M621_06345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AGP43465
UniProt:
S4YGH3
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All DBs
Position
1341086..1341877
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AA seq
263 aa
AA seq
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MPEGPEIRRAADALAAAVIDQPLTEVGFAFPQLKHYRDRLIGERIIAIEPRGKALLTHFS
NGLTMYSHNQLYGVWKVAKAGEAPDTKRDLRVRLETAQQAILLYSASEITLGPREEIEQH
PFLQRIGPDVLDMSLTVTMVAQRLLSPAFRRRQLGGMLLDQGFLAGLGNYLRAEILWQAE
LAPQHRPQDLTPETLQRLAQALLAVPRLSYQTRGPVDENRHHGALFSFKVFHRSGEPCER
CGAMIVRTQLSSRPFYWCPGCQK
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaggaccggaaattcgccgggcggcggatgcgctggctgcggcggtgatcgac
cagccgctgacggaagtgggtttcgcttttccccagcttaaacattaccgcgatcggtta
atcggtgaacgtatcattgctatcgagccacgcggcaaggcgctgctgacccacttttct
aacgggttgacgatgtacagccacaaccagctgtatggcgtgtggaaagtggcaaaagcg
ggagaagcgccggataccaagcgtgatttgcgcgtgcggctggaaacggcgcagcaggcg
attttattgtacagcgcctcggagatcaccctgggcccgcgcgaagagattgaacaacat
ccgtttttgcaacgcattggtcccgatgtgctggatatgtcgctgacggtgacaatggtg
gcacaacggctgctgtcgccggcgtttcgccgccgacaattggggggcatgctgctcgac
caggggtttcttgccgggttgggcaactacctgcgcgccgaaattctctggcaggcggaa
ctggcgccacagcaccggccacaggacctgacgccggaaacgctgcagcggctggcgcag
gctctgctggcggtgcctcgcctgtcttaccagacgcgcgggccggtggatgagaatcgc
catcatggcgcactgttcagctttaaggttttccaccgcagcggtgagccttgcgagcgc
tgcggcgcgatgattgtcagaacccaactgtcgtcacggccgttttattggtgccccggt
tgccaaaagtag
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