Sphingomonas sanxanigenens: NX02_22455
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Entry
NX02_22455 CDS
T03929
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NX02_22455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssan03019
]
NX02_22455
03009 Ribosome biogenesis [BR:
ssan03009
]
NX02_22455
Enzymes [BR:
ssan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NX02_22455
Messenger RNA biogenesis [BR:
ssan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NX02_22455
Ribosome biogenesis [BR:
ssan03009
]
Prokaryotic type
rRNA helicases
NX02_22455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHE56110
UniProt:
W0AKB1
LinkDB
All DBs
Position
complement(4689948..4691660)
Genome browser
AA seq
570 aa
AA seq
DB search
MPFENLPSLLGEALAARGYESLTSVQSAVLAPEAAGRDLIVSAQTGSGKTVGFGAAMAAD
LLGDADRMARPGAPLALVIAPTRELALQVQRELQWLYEAAGARVISCVGGMNVRAEQRAL
GQGCHIVVGTPGRLCDHLERGALQTGSIRVVVLDEADEMLDMGFRDNLEQILDATPTERR
TLLFSATMPAPIAQLAKSYQRDALRISTVSEQRGHGDIAYQAVAVAPGDIEHAVVNLLRF
HETAGAIVFCATRENVRHLHASLVERGFGAVALSGEHSQNERNQALQALRDRRARVCVAT
DVAARGIDLPDLRLVIHAELPRDAETLQHRSGRTGRAGKKGTAALIVPYPRRRRVESMLR
GARIPAEWVEAPTPEMIRAQDDVRLIETLSQPVEVEDTDRALAARLLETMSAEDVAAALV
RAHRSALPEPEELMVDTGPVRRGRDDAPDGRSDHGDRGERGVWFRLDLGRQHRADPRWLL
PLICRRGHISKGQIGAIRIGDRETLFEVAMSVADRFADAVKRTASDDPDSDGGNRIEMAH
GAPAPRARPSRPLQARPPHAKRPPRQQHRR
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgaaaatctgccgtccttgctcggcgaggccctcgccgcgcgcggttatgaa
tcgctcacctccgtccagtccgccgtgcttgcccccgaggccgcggggcgtgacctgatc
gtttcggcacagaccgggtcgggcaagacggtggggttcggcgcggcgatggcggcggac
ctgctgggcgatgccgatcggatggcacggccgggcgcaccgctcgcgctggtcatcgcg
ccgacgcgcgaactggcgctgcaggtgcagcgcgaactgcaatggctctatgaggcggcc
ggcgcgcgcgtcatctcctgtgtcggcggcatgaacgtccgcgccgagcagcgcgcgctg
gggcagggctgccacatcgtcgtcggcacgccggggcggttgtgcgatcatctggagcgc
ggcgcgctccagaccggatcgattcgcgtcgtcgtgctcgacgaggcggacgagatgctc
gacatgggcttccgcgacaatctggagcagatcctcgacgcgacaccgaccgagcggcgg
acgctgctgttttccgcgaccatgccggcaccgatcgcgcagctcgccaaatcctatcag
cgcgatgcgctgcgcatctcaaccgtcagcgagcagcgcggccatggcgacatcgcctat
caggcggtcgcggtggcgccgggcgacatcgagcatgcggtcgtcaacctgctgcgcttc
cacgagaccgccggtgcgatcgtgttctgcgcgacgcgcgagaacgtccgccacctccat
gccagtctggtcgagcgcgggttcggcgcggtcgcgctgtcgggcgagcatagccagaac
gagcgcaaccaggccttgcaggcgttgcgcgaccgtcgcgcccgcgtctgcgtcgccacc
gacgtcgccgcccgcggcatcgacctgccggacctgcggctggtgatccacgccgaactg
ccgcgcgatgccgagaccctgcagcatcgttcgggccgcaccggccgcgccggcaagaag
ggcaccgccgcgctgatcgtgccctatccgcgccgccgccgcgtcgaatcgatgctgcgt
ggggcgcgcatcccggccgagtgggtcgaggcgccgacacccgagatgatccgcgcgcag
gatgatgtgcggctgatcgaaacgctcagccagccggtcgaggtggaggatacggatcgc
gcgctcgccgcacggctgctggaaacgatgtcggccgaagatgtcgccgccgctctggtg
cgcgcgcatcgctcggcgctgcccgagcccgaggagttgatggtcgataccggcccggtg
cgccgtgggcgcgacgacgcgccggatggccgcagcgatcacggtgatcggggtgagcgc
ggcgtatggttccgcctcgatctgggccgccagcaccgggccgacccgcgctggctgctg
ccgctgatctgtcgccgcggtcacatcagcaagggccagatcggcgcgatccgcatcggc
gatcgcgaaaccctgttcgaagtggcgatgagcgtggcggatcgcttcgccgatgcggtc
aagcgcaccgcaagcgacgatcccgacagcgacggtggcaaccgcatcgagatggcgcac
ggcgctccggcgccgcgcgcgcggccgtcccgcccgctccaggcccgtccgccgcatgcc
aagcggccgccgcgccagcagcaccgccggtaa
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