Sphingomonas sanxanigenens: NX02_23400
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Entry
NX02_23400 CDS
T03929
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssan
Sphingomonas sanxanigenens
Pathway
ssan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NX02_23400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssan03019
]
NX02_23400
03400 DNA repair and recombination proteins [BR:
ssan03400
]
NX02_23400
Enzymes [BR:
ssan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NX02_23400
Messenger RNA biogenesis [BR:
ssan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NX02_23400
DNA repair and recombination proteins [BR:
ssan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NX02_23400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHE56295
UniProt:
W0AKT1
LinkDB
All DBs
Position
complement(4915267..4917030)
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AA seq
587 aa
AA seq
DB search
MIDPTALLRDTFGFPGFRGVQRQVVDRVLAGDRTLAVMPTGAGKSLTYQLPAVALPGTCV
VVSPLIALMHDQLRAALAVGIRAATLTSVDADRNETIARYRAGELDLLYVAPERASNDGF
RQLLASAPLALFAIDEAHCVSEWGHDFRPDYRLLRPLLDAFPDVPRLALTATADEHTRAD
ILDQLGIPADGLIVAGFDRPNIRYMIAPRESTTRQVADFIAEQSGPGIVYAQTRAGVERL
AEALAGKGRPVLPYHAGLDPAVRRENQAKFVASEDMVMVATIAFGMGIDKPDVRFVVHAG
LPKSIEAYYQETGRAGRDGDPAVAQLFWGADDFARARQRMGEVEPHRQPGERARLTALGA
LVETATCRRAILLRHFGETPPASCGNCDNCLSPPAAIDATEVARKFLSAVYRTGQSFGAG
HIEAVLTGKANEKVRQRGHDQLSVFNIVTDEEAPLVKPVSRALLLRDALRTSEHGGLEFG
PEARGILKGEVPVALVLPPRPERRRQRGGAVPNPVGDPLFEALRAARRELAMDAGVPPYV
IFHDSTLREMAQVKPTSHKALGQISGVGSRKLDDYGDAFLNVIRAFV
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaccctaccgcgctgctgcgcgacactttcggctttcccggcttccgtggcgtg
cagcgccaggtggtcgaccgcgtgctggctggcgaccggacattggcggtgatgccgacc
ggcgccggcaaatcgctgacctatcagcttccggcggtcgcgctgcccggcacgtgcgtc
gtcgtctcgccgctgatcgcgctgatgcacgaccagcttcgcgccgcactggcggtgggc
atccgcgcggcgacgctgacctcggtcgatgccgaccgcaacgagacgatcgcgcgctat
cgcgccggtgagctcgatcttctctatgtcgcgcccgagcgcgcttccaacgacggcttc
cgccagttgctggcaagcgcgccgctggcgctgttcgcgatcgacgaggcgcattgcgtt
tccgaatgggggcatgatttccgccccgattatcgcctgttgcgcccgctgctggatgcc
tttccggatgtgccccggctggcgctgaccgccaccgccgacgaacatacccgcgccgat
atcctcgaccagctcggcattcccgccgacgggctgatcgtcgccgggttcgaccggccc
aacatccgctacatgatcgcgccgcgcgaaagcacgacgcggcaggtggccgatttcatc
gccgagcagtcggggccgggcatcgtctatgcgcagacccgcgccggggtggagcggctc
gcggaggcactggcgggcaaggggcggccggtgctgccctatcatgccgggctcgacccg
gcggtgcggcgcgagaatcaggcgaagttcgtcgcttccgaggacatggtcatggtcgcg
acgatcgcgttcggcatgggcatcgacaaacccgacgtgcgcttcgtcgtccatgcgggc
ctgcccaagtcgatcgaggcctattatcaggaaaccgggcgtgcggggcgagacggcgat
ccggcggtcgcacaactcttctggggcgccgacgatttcgcccgggcccgccagcgcatg
ggcgaggtggagccgcaccgccagcccggcgagcgggcgcggctgaccgcgctcggcgcg
ctggtcgagaccgccacctgccgccgcgccatcctgctgcgccatttcggcgagacgccg
cccgccagctgcggcaattgcgacaattgcctgagcccgcccgccgcgatcgacgcgacc
gaggtggcgcgcaagttcctctccgctgtctatcgcaccggccagagcttcggcgccggc
catatcgaggcggtgctgactggcaaggccaatgaaaaggtgcgccagcgcgggcatgac
cagctttcggtgttcaacatcgtcacggatgaggaagcgccgctggtgaaaccggtctcg
cgcgcgctgctgctgcgggatgcgctgcgcaccagcgagcatggcgggctggaattcggc
cccgaggcgcgcggcatcctgaagggcgaggtgccggtggcgctggtgctcccgccccgg
cccgagcgccgccgccagcgcggcggggccgtgcccaatccggtcggcgatccgctgttc
gaagcgctgcgcgccgcccgtcgcgaactggcgatggacgccggcgtgccgccctatgtg
atcttccatgattcgacgttgcgcgagatggcacaggtcaagccgacctcgcacaaggcg
ctgggccagatcagcggcgtcggctcgcgcaagctcgatgattatggcgacgcgtttctc
aacgtgatccgggcgtttgtgtga
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