Sphingomonas sabuli: H8M03_02230
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Entry
H8M03_02230 CDS
T07540
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
ssau
Sphingomonas sabuli
Pathway
ssau02024
Quorum sensing
ssau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8M03_02230 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
H8M03_02230 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssau03019
]
H8M03_02230 (hfq)
03036 Chromosome and associated proteins [BR:
ssau03036
]
H8M03_02230 (hfq)
Messenger RNA biogenesis [BR:
ssau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
H8M03_02230 (hfq)
Chromosome and associated proteins [BR:
ssau03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
H8M03_02230 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
QNM83194
UniProt:
A0A7G9L3J5
LinkDB
All DBs
Position
439142..439621
Genome browser
AA seq
159 aa
AA seq
DB search
MTAKTTSLQDHFLNSARRSKTPLTAFLLKGVKLQGVITWFDPFSLLLRREGRTQLVYKHS
ISTIMPGGAMDLGDLSAWEGQGQKGLQDAFLSAAERDGEAVTMFLVNGVMLQGQVARHDQ
FSLLLERDAQVQLVYKHAISTIEPEHPLQLSDPAGGEAK
NT seq
480 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaagacaaccagcctgcaggaccatttcctcaacagcgcccgcaggtctaaa
acgcccctgacggccttcctgctcaagggcgtcaagcttcagggggtgataacctggttc
gacccgttctcgctgttgctgcgccgcgaaggtcgcacgcaactggtctataagcattcg
atttccaccatcatgccgggcggcgcgatggatcttggtgacctgtcggcgtgggaaggc
cagggacaaaagggattgcaggatgcattcctgtcggccgcggagcgtgatggggaagca
gtcacgatgttcctggtcaacggcgtcatgttgcaggggcaggtcgcccggcacgaccag
ttctcgctgctgctggaacgggatgcgcaggttcaactggtttacaagcacgccatttcg
acgatcgagcccgagcatccgctgcagctgagcgaccctgcaggcggcgaggccaagtga
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integrated database retrieval system
