Sphingomonas sabuli: H8M03_11945
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Entry
H8M03_11945 CDS
T07540
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssau
Sphingomonas sabuli
Pathway
ssau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H8M03_11945 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssau03021
]
H8M03_11945 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssau03400
]
H8M03_11945 (rpoB)
Enzymes [BR:
ssau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H8M03_11945 (rpoB)
Transcription machinery [BR:
ssau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H8M03_11945 (rpoB)
DNA repair and recombination proteins [BR:
ssau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H8M03_11945 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
CovS-like_HAMP
RelB
Motif
Other DBs
NCBI-ProteinID:
QNM82691
UniProt:
A0A7G9L242
LinkDB
All DBs
Position
complement(2395047..2399213)
Genome browser
AA seq
1388 aa
AA seq
DB search
MATKAIETPAFHNGRTASARRIRKIFGNIHEISEMPNLIEVQRESYEQFLRSDPAIGYVS
GLEKTLRSVFPIEDFAGTAHLDFDHYVLEEPKFDTDECRQRGLTFAAPMRVTLRLTTFEI
DPDTDARSVIDIKEQDVYMGDMPLMTQNGTFIINGTERVIVSQMHRSPGVLFDHDRGKTH
ASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLTSEEILNTFY
NTVSYERGKNGWQIPYVAENWRGLKPTYDVADAKTGEVIFKANEKITPRRANQAGKDGLQ
NLVIPTEEIFGRFSAFDLVNDKTGEIYIEAGDEVSEENLEKMDKAGIKTLELLDIDYVNT
GPWMRNTLKADKSEDQDSALADIYRVMRPGEPPTKETADALFYGLFFDPERYDLSAVGRV
KLNMRLGLDAEDTVTTLRREDILAVVQELVNLKDGKGEIDDIDNLANRRVRSVGELLENQ
YRIGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSE
VTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNK
YGFIETPYRKVVDGKVTDEVVYLSAMEEAKHTIAQANAELNTDRTFGEEIVSARRAGDFL
MAPRDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPLVGTG
MEETVARDSGAAIAARRPGIVDQVDAGRIVVRVTGELRPGESGVDIYTLMKFQRSNQNTC
INQRPLVKKGAMVEAGQIIADGPSTDFGELALGRNVLVAFMPWNGYNYEDSILISERIVK
DDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILC
GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDIDDR
TRSIQTEEKERLKKDADDERGILNRATFARLKEMLLGQTATAAPKGVKKGAKIDEETLEA
VQPHEWWKIAVKDDQRQADVEALKGQYDEAANTILRRFEDRVQKIEAGDELAPGVLKMVK
VFVAVKRKLQPGDKMAGRHGNKGVISRILPAEDMPFLEDGSPVDIVLNPLGVPSRMNVGQ
IFETHLGWAARGLGQQVQQMLEGMYERGKDLADKDVKEVRTKLKGIYGGHYAKEIDAQGD
DEVMEMAGALTRGIPMGTPVFDGARESDVTDMLEMAGLESSGQVTLYDGRTGNPFDRKVT
VGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYT
LQEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELDSVESDD
DTPAIAAE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagcgatcgaaactccggccttccacaatggccgtaccgcttccgcgcgg
cgtatccgcaagatcttcggcaacatccacgagatcagcgagatgccgaacctcatcgag
gttcagcgcgagagctatgagcagttcctccgttccgatcccgcgatcggctacgtttcg
ggactcgaaaagacgcttcgctcggtcttcccgatcgaggatttcgccggcaccgcgcac
ctcgatttcgatcattacgtgctcgaagagcccaagttcgacaccgatgagtgccgccag
cgtggcctcacctttgccgcgccgatgcgcgtcaccctgcgcctgaccaccttcgagatc
gaccccgacacggacgcccgttcggtcatcgatatcaaggagcaggacgtgtacatgggc
gacatgccgctcatgacgcagaacggcactttcatcatcaacggcaccgagcgtgtcatc
gtcagccagatgcaccggtcgccgggcgtcctgttcgaccatgaccgcggcaagacgcac
gccagcggcaagtatctcttcgccgcccgggtcatcccgtatcgcggctcgtggctcgac
ttcgaattcgacgctaaggacatcgtcaacgtccgtatcgaccgcaagcgcaagctgccg
gtcacggcgctgctgcacgcgctgggtctgaccagcgaggaaatcctcaacaccttctac
aacacggtcagctacgagcgtggcaagaacggttggcagatcccctacgtcgccgagaat
tggcgcggcctgaagccgacctatgacgtggccgacgccaagaccggcgaagtgatcttc
aaggcgaacgagaagatcacgccgcgccgcgccaaccaggccggcaaggacgggctccag
aatctcgtcatcccgaccgaggaaatcttcggccgcttctccgcctttgacctggtcaac
gacaagaccggcgaaatctacatcgaggccggcgacgaggtttcggaagaaaacctcgag
aagatggacaaggcgggcatcaagacgctcgagctgctggacatcgattacgtcaacacc
ggtccgtggatgcgcaacacgctgaaggcggacaagtcggaagaccaggattcggcgctg
gccgacatctaccgggtgatgcgcccgggcgaaccgccgacgaaggaaaccgcggacgcg
ctattttacggcctgttcttcgatccggagcgctacgaccttagcgccgtcggccgcgtg
aagctcaacatgcgccttggcctcgacgccgaggacaccgtcaccaccctgcgccgggag
gacatcctcgccgtcgtccaggaactggtgaacctgaaggacggcaagggcgagatcgac
gacatcgacaaccttgccaaccgccgcgtccggtcggtcggcgagctgctggagaaccag
tatcgcatcggcctgctgcgcatggagcgcgcggtgaaggagcggatgagcagcgtcgac
gtgtcgacggtcatgcccaacgacctgatcaacgccaagccggcggtggccgcggtgcgc
gaattcttcggctcgtcgcagctgtcgcagttcatggaccagaccaacccgctgtcggaa
gtgactcacaagcgccgcgtctcggccctcgggcccggcggtctcacccgtgagcgcgcc
ggcttcgaagtgcgcgacgtccacccgacgcactatggccgcatctgtccgatcgaaacg
ccggaaggcccgaacatcggcctcatcaattcgctcgccagcttcagccgggtgaacaag
tacggcttcatcgaaacgccgtaccgcaaggtcgtcgacggcaaggtcactgacgaggtc
gtctacctttcggcaatggaagaagcgaagcacacgatcgcgcaggcgaacgcggagctg
aacaccgatcgcacgttcggcgaggagatcgtttccgcccgccgcgccggcgacttcctg
atggcgccgcgcgaccagatcaccttgatggacgtcagccctaagcagctggtgtcggtc
gcggcctcgctgatcccgttcctggagaacgacgacgccaaccgcgcgctgatgggatcg
aacatgcagcgccaggccgttccgctgttgcaggcggaagcgccgctcgtcggtaccggc
atggaagagaccgtcgcccgcgattcgggcgccgcgatcgctgcccgccgtccgggcatc
gtcgaccaggtcgacgcgggccgtatcgtcgtccgcgtcaccggtgagcttcgtccgggc
gaatccggcgtcgacatctacacgctgatgaagttccagcggtcgaaccagaacacctgc
atcaaccagcgtccgctggtgaaaaagggtgcgatggtcgaagcgggccagatcatcgcc
gacggaccgtcgacggacttcggcgagctcgcgctcggccgcaacgtcctcgtcgcgttc
atgccgtggaacgggtacaactacgaggactcgatcctgatctccgagcggatcgtgaag
gacgacgtcttcacctcgatccacatcgaagagttcgaggtcatggcccgcgacaccaag
cttgggccagaagacatcacccgcgacattccgaacgtcggcgaggaagcgctgcgcaac
ctcgacgaggcgggcatcgtgtacatcggagccgaggtcgagccgggcgacatcctgtgc
ggcaagatcacgccgaagggcgaaagcccgatgacgccggaggaaaagctcctccgcgcc
atcttcggcgaaaaggcctcggacgttcgcgacacctcgctgcgcctgccgccgggcgtt
gccggcacggtcgtcgaggtccgcgtcttcaatcgccacggcatcgacatcgatgaccgt
acgcgctcgatccagaccgaggagaaggagcggctgaagaaggacgccgacgacgaacgc
ggcattctcaaccgcgctaccttcgcccgtctcaaggaaatgctgcttggccagacggcc
accgcggctccgaaaggcgtgaagaagggtgccaagatcgacgaggagacgcttgaggcg
gtgcagccgcacgagtggtggaagatcgcggtcaaggacgaccagcgccaggccgacgtc
gaagccctgaagggccagtatgacgaagccgccaacacgatcctgcgccggttcgaggac
cgcgtgcagaagatcgaggcgggcgacgagctggcgccgggcgtgctcaagatggtcaag
gtgttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggc
aacaagggcgtcatcagccgcatcctgccggccgaggacatgccgttcctggaggacgga
agcccggtcgacatcgtgctcaacccgctgggcgtgccgtcgcgcatgaacgtcgggcag
atcttcgagacccatctgggctgggccgcgcgcggccttggccagcaggtccagcagatg
ctcgagggcatgtacgagcgcggcaaggaccttgccgacaaggacgtcaaggaagtccgg
accaagctgaagggcatctacggcggccattacgccaaggaaatcgacgcccagggcgac
gatgaggtcatggaaatggccggggctttgacccgcggcattccgatgggcaccccggtg
ttcgacggcgcccgtgaatcggacgtcaccgacatgctggaaatggccggactggaatcc
tcgggccaggtgacgctttacgacggtcgcaccggcaatccgttcgaccgcaaggtgacg
gttgggtacatctacatgctcaagctgcaccacctcgtggacgacaagatccacgcgcgt
tcgatcgggccgtacagcctcgtcacccagcagccgctgggcggcaaggcgcagttcggc
ggccagcgtttcggcgaaatggaagtgtgggcgctgcaggcatacggcgcggcgtacacg
ctgcaggaaatgctgacggtgaagtcggacgacgtcatcggccgcaccaaggtctacgaa
gccatcgtcaagggcgacgacacgttcgaagcgggcattccggaaagcttcaacgtgctg
gtcaaggaaatgcgcagccttggcctcaacgtcgaactcgattcggtcgagagcgacgac
gacacgccggccatcgcagccgaatag
DBGET
integrated database retrieval system
