Streptococcus suis BM407 (serotype 2): SSUBM407_0764
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Entry
SSUBM407_0764 CDS
T00935
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssb
Streptococcus suis BM407 (serotype 2)
Pathway
ssb03030
DNA replication
ssb03410
Base excision repair
ssb03420
Nucleotide excision repair
ssb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSUBM407_0764 (lig)
03410 Base excision repair
SSUBM407_0764 (lig)
03420 Nucleotide excision repair
SSUBM407_0764 (lig)
03430 Mismatch repair
SSUBM407_0764 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssb03032
]
SSUBM407_0764 (lig)
03400 DNA repair and recombination proteins [BR:
ssb03400
]
SSUBM407_0764 (lig)
Enzymes [BR:
ssb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSUBM407_0764 (lig)
DNA replication proteins [BR:
ssb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSUBM407_0764 (lig)
DNA repair and recombination proteins [BR:
ssb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSUBM407_0764 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSUBM407_0764 (lig)
MMR (mismatch excision repair)
DNA ligase
SSUBM407_0764 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSUBM407_0764 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
A24_N_bact
RNA_lig_T4_1
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
CAZ55596
UniProt:
A0A0H3MUK6
LinkDB
All DBs
Position
841479..843437
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AA seq
652 aa
AA seq
DB search
MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG
GKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAVDITVRGECYMPKASFDRVNKQRQ
EAGEAEFVNPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDALGFV
TNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIPSHCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFGAGLVHDVADIYKLTVDDLLTLEGFKEKSAN
KLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQ
VIAKSLTTFFASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNE
AKAKLEALGANVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaatatcagaattagttagcgtgctcaatcaatacgctaaagagtattat
caattggaccaacctagcgtatcagatgcagaatatgatacgctttatcgtgaattagta
gagctagaaacggctcatccagaactgattttaccagatagtcctacccatcgggtcggg
ggaaagatgctagacggatttgaaaaatatagtcatgtttatcctctttttagtttgcag
gatgccttttctcgtgaagagttagaagcttttgaccagcgagttcgcaaggaatttcct
caagcaacgtatatctgtgaattgaagattgatggtctgtctatttccctgacctatgaa
gcgggtaatttagtcgtgggtgctacacgtggtgacggtagtgtcggtgaaaatatcaca
gaaaatctcaaacgagtggctgatgttcctttgaccttacccgaagctgtggacatcact
gtccgaggtgagtgttatatgccaaaagcttcctttgaccgtgttaacaaacagcgtcag
gaggctggtgaagctgaatttgttaatccgcgtaatgcagcagcagggaccctccgccag
cttgatacgggagtggtggcccagcgtggtctcgctactttcctctaccaagaggctagt
ccatctgaagcgactagtcagtcacaagtactggagaaactggatgctctgggatttgtg
accaaccacgaatattgcttggcggagtcgattgatgacacgtgggattttattgaaaaa
atagcagagcgtagagatgatttaccctatgagatagatggtgttgtcatcaaggtaaat
gatttagctatacaagaagaactaggatttacagttaaagcgccacgatgggcagtagct
tacaagtttccagctgaggaaaaagaagcagaaatcttgtcggttgattggactgttggc
cgaacaggtgttgtgacaccaacggccaatcttagtcctgttcaactggcaggaacgact
gtcagtcgagcaactttgcataacgtagattatatcgccgaaaaagatattcgtattggc
gatacggtcattgtttataaggcgggagatattattccagcagttctgaaagtggtggac
aagtatcgaaaagagcaagaaatcatgcccattcctagtcattgtccgtcttgtcagagc
gacctacaacactatgaggacgaagttgccctccgctgtatcaaccctatttgtcctagc
cagctgatgagtaagttggaacattttgcaagtcgggatgctatgaatatcgcagggcta
gggtcttcaatcgttgaaaaactctttggagcaggcttggtacacgatgttgctgatatt
tataaattaactgttgatgacctattgaccttggaaggtttcaaagaaaaatcagctaac
aagctctatcaagccattcaaacttctaagagtaactcagcagaatgcctcctatttgga
ctaggtattcgccatgtaggtagtaaggcaagtaagattttagtagaaaaatttggtgat
ttagaaactctagcatttgctgatcaagaagcaattgcttcgctagaaggtcttggtcag
gttattgctaagtctttgacaactttttttgctagtgagggtgcgcaacaacttttagcc
gaacttaaggaagctaaggtaaacttaacctatctcggccaagtagtagatgaaaatgct
gcgctatcgggtatgacagttgtactgactggtaaattggagcgaatgaaacgaaacgaa
gccaaagccaaattagaagctttaggggcaaatgtagcgggatctgtttctaaaaaaact
aatcttgtggttgccggaacagatgcaggcagtaaattgaccaaagcacaggagctaggt
attgaaataaaagatgaggcttggttagagagcttgtaa
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