Sus scrofa (pig): 100101552
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Entry
100101552 CDS
T01009
Symbol
COL6A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04518
Integrin signaling
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
ssc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100101552 (COL6A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100101552 (COL6A2)
04518 Integrin signaling
100101552 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100101552 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100101552 (COL6A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100101552 (COL6A2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100101552 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100101552 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100101552 (COL6A2)
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100101552 (COL6A2)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100101552 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
100101552 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
100101552
NCBI-ProteinID:
XP_020938158
Ensembl:
ENSSSCG00000028022
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MSGRTGAAKMLHSPCSALLLWGLLGAVHAQQQEVIAPGTSDRNSCPEKADCPIHVYFVLD
TSESVTMQSPTDSLLSHMQQFVLQFISQLQDELYLDQVALSWRYGGLHFSDLVEVFSPPG
SDRASFTKSLQSISSFRRGTFTDCMLSNMTQEVRRHVGKVKVNFAVVITDGHVTGSPCGG
IKLQAERAREEGIRLFAVPPNLQLNEQGLRDIASTPHELYRNNYATMRSDSTEIDQDTIN
RIIKVMKHEAYGECYKVSCLEIPGPPGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEG
PIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGDRG
PDGYVGEAGSPGERGDQGAKGDAGRPGRRGPPGENGAKGSKGYQGNNGSPGSPGVKGAKG
GPGPRGPKGEPGRRGDPGTXGRPGQRWPKGEKGDPGPEGPRGLAGEVGSKGAKGDRGLPG
PRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGP
PGPEGGRGDFGSKGRPGTKGQKGEPADPGPPGEPGPRGXRGAPGPEGEPGPPGDPGLTEC
DVMTYVRETCGCCDCEKRCGALXVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDP
KSETGTRVGVVQYSHEGTFEAIQLDDERIDSLSSFKEAVKNLEWIAGGTWTPSALKFAYN
KLIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCNHDVTVTAIGIGDMFHEKHESENL
YSIACDKPQQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPDLPCQTELYVAQCTQRPV
DIVFLLDGSERLGEQNFHKAQRFVEDVSRRLTLARRDDDPLNARVALLQFGGPREQQXAF
PLTFNLTVIQEALASSRYLNSFSHVGTGIVHAINQVVLGAPAGARRHAELAFVFLTDGIT
GNESLEEAVHSMRKQNVVPTVVAVGSDVDADVLSKISLGDEAAVFREKDYDSLVQPGFFD
RFIRWIC
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggcgcacgggtgccgccaagatgctccacagcccctgctccgccctcctgctc
tgggggctcctgggggccgtccacgcccagcagcaggaggtcatcgccccaggcacctcc
gacaggaacagctgcccagagaaggccgactgcccgatccacgtgtacttcgtgctggac
acgtcggagagcgtcaccatgcagtcccccaccgacagcctgctctcccacatgcagcag
ttcgtgctgcagttcatcagccagctgcaggacgagctctacctggaccaggtggccctg
agctggcgctacggcggcctgcacttctccgacctggtggaggtgttcagcccgccgggc
agcgaccgggcctccttcaccaagagcctgcagagcatcagctccttccgccggggcacc
ttcaccgactgcatgctgtccaacatgacccaggaggtccggcggcacgtgggcaaggtg
aaggtcaacttcgccgtggtcatcaccgacggccacgtcaccggcagtccctgcgggggc
atcaagctgcaggccgagcgggcccgggaggagggcatccggctcttcgcggtgcccccc
aacctgcagctgaacgagcagggcctgcgggacatcgccagcacgccgcacgagctctac
cgcaacaactacgccaccatgcgctccgactccacggagatcgaccaggacaccatcaac
cgcatcatcaaggtcatgaaacatgaagcctacggagagtgctacaaggtgagctgcctg
gagatcccggggccccccggcccaaagggctaccgcggccagaagggtgccaagggcaac
atgggtgagcccggagaacctggacagaaggggcgacagggagatccaggcatcgaaggc
cccattggattcccaggacccaagggggttcctggtttcaaaggagagaagggcgagttt
ggagccgatgggaggaagggcgcccccggcctggccggcaagaacgggaccgatggtcag
aagggcaagttagggcgcattggacctcctggctgcaagggcgaccccggcgatcggggc
cccgacggttacgtgggggaagcgggcagccctggagagcgaggagaccaaggtgccaag
ggggatgctggccgcccaggacgcagaggacccccgggggaaaacggggcaaaaggaagc
aagggttaccaaggcaacaacggatccccgggaagtccgggcgtgaagggggccaagggc
gggcctgggccccgaggacccaaaggcgagccggggcgcaggggagaccctggaacanna
gggcggcccgggcagcgatggcccaagggcgagaagggggaccctggccctgagggcccc
cggggcctggctggagaggtcggcagcaaaggagccaagggagaccgaggcctgcctgga
cccagaggcccccagggagctcttggagagcccgggaagcagggatctcggggagacccc
ggcgatgctggtccccgcggagactcaggacagcctggccccaagggagaccccggcagg
cctggattcagctacccgggcccccgaggagcacccggagagaaaggcgagcctggcccc
cctggccccgaggggggcagaggtgactttggctccaaaggaagaccggggacaaaaggc
cagaagggcgagcctgcggatcctggtccccctggtgagccaggcccccggggcnagaga
ggagccccaggaccagagggagagcctggccccccaggagaccccggcctcacggagtgc
gacgtcatgacctacgtgagggagacctgtggatgctgtgactgtgagaagcgctgcggc
gccctgngagtggtgttcgtcatcgacagctctgagagcatcggctacaccaacttcacc
ctcgagaagaacttcgtcatcaacgtggtcaacaggctgggggccatcgccaaggacccc
aagtcggagacggggacccgcgtgggtgtcgtgcagtacagccacgagggcaccttcgaa
gccatccagctggacgacgagcgcatcgactcgctgtccagcttcaaggaggccgtcaag
aacctcgagtggatcgccggcggcacctggacgccctcggcgctcaagttcgcctacaac
aagctcatcaaggagagccggcgccagaagacgcgcgtgttcgccgtggtcatcaccgac
ggccgccacgacccccgggacgatgacctcaacctgcgcgcgctgtgcaaccacgacgtc
acggtgacggccatcggcatcggggacatgttccacgagaagcacgagagcgagaacctg
tactccatcgcctgcgacaagccgcagcaggtgcgaaacatgacgctcttctccgacctg
gtggcggagaagttcatcgacgacatggaggacgtcctgtgcccagacccccagatcgtg
tgccccgaccttccctgccaaacagagttgtacgtggcccagtgcacgcagcggcccgtg
gacatcgtcttcctgctggacggctccgagcggctgggcgagcagaacttccacaaggcg
cagcgcttcgtggaggacgtgtcccggaggctgacgctggcgcgcagggacgacgacccg
ctcaacgcgcgcgtggcgctgctgcagttcgggggcccgcgcgagcagcagntggccttc
ccgctgaccttcaacctgacggtcatccaggaggcgctggcgagctcgcgctacctcaac
tccttctcgcacgtgggcacgggcatcgtgcacgccatcaaccaggtggtgctcggcgcc
ccggccggggcgcgccgccacgccgagctggccttcgtgttcctcacggacggcatcacg
ggcaacgagagtctggaggaggcggtgcactccatgcgcaagcagaacgtggtgcccacc
gtggtggctgtgggcagcgacgtggacgcggatgtgctgtccaagatcagcctgggcgat
gaggccgccgtcttccgcgagaaggactacgacagcctggtccagcccggcttctttgac
aggttcatccgctggatctgctag
DBGET
integrated database retrieval system
