Sus scrofa (pig): 100517307
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Entry
100517307 CDS
T01009
Symbol
SLC6A4
Name
(RefSeq) sodium-dependent serotonin transporter isoform X1
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04721
Synaptic vesicle cycle
ssc04726
Serotonergic synapse
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09156 Nervous system
04726 Serotonergic synapse
100517307 (SLC6A4)
04721 Synaptic vesicle cycle
100517307 (SLC6A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssc02000
]
100517307 (SLC6A4)
Transporters [BR:
ssc02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
100517307 (SLC6A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
5HT_transport_N
Motif
Other DBs
NCBI-GeneID:
100517307
NCBI-ProteinID:
XP_020923179
Ensembl:
ENSSSCG00000017797
LinkDB
All DBs
Position
12:complement(46285995..46328377)
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AA seq
667 aa
AA seq
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MNELATPLIKSAKDRHRTELQNSGQSTAHVCQRPFGRMETTPLNSQRELSAYKDGDDCQE
NGVLRKGLPAPGDKAESSHISNGYSAVPSPGAGDDTQNSIPAATTALVAEVHPGERETWG
KKVDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLPYTIMAIFGGIPLFYMELALGQYH
RNGCISIWRKICPIFKGIGFAICVIAFYIASYYNTIMAWALYYLISSFTDQLPWTSCKNS
WNTGNCTNYFSEDNVTWMLHSTSPAEEFYTRHVLQIHRSKGLQDLGGISWQLALCIMLIF
TIIYFSIWKGVKTSGKVVWVTATFPYIILSILLVRGATLPGAWRGVLFYLKPNWQKLLET
GVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQDALVTSVVNCMTSFVSGFVIFTVL
GYMAEMRNEDVSEVAKDAGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGL
EGVITAVLDEFPHFWSKRREWLALGVVITCFLGSLITLTFGGAYVVKLLEEFATGPAVLT
VALIEAVAVFWFYGITQFCSDVKEMLGFSPGWFWRICWVAISPLFLVFIICSFLMSPPQL
WLFQYNYPQWSIILGYCIGTSSFICIPTYITYRLIITPGTLKERIVKGITPETPTEIPCG
DIRLNAV
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagctcgccaccccactgataaaaagcgctaaggacaggcacagaaccgagctt
cagaattcgggtcagtccacggcacatgtgtgtcagcgtccattcggcagaatggagacc
acgcccttaaattcccagagggagctgtcagcttataaggatggagacgactgtcaagaa
aatggtgttctgcggaagggcctccctgctcctggggacaaggccgagtccagccacatc
tccaatgggtactcagcagttccgagcccgggcgcaggggacgacactcagaactccatc
ccggctgccaccaccgccctagtggctgaggttcatccgggggaacgggagacctggggc
aagaaggtggatttccttctctcggtcatcggctacgctgtggacctgggcaacgtctgg
cgctttccctacatctgttaccagaacggagggggggcattccttctcccctacacaatc
atggccattttcggggggatcccactcttctacatggagctcgcgctgggccagtaccac
cgaaatggatgcatttcgatatggaggaaaatctgcccaattttcaaagggatcggcttc
gccatctgcgtcatcgccttctacatcgcctcctactacaacaccatcatggcctgggcc
ctctactacctcatctcctctttcacggaccagctgccctggaccagctgcaagaactcc
tggaacaccggcaactgcaccaactacttctccgaggacaacgtcacctggatgctccac
tcaacgtcccctgcagaagaattttacacacgccacgtcctgcagatccaccggtctaag
ggactccaggacctggggggcatcagctggcagcttgccctctgcatcatgctgatcttc
accattatctactttagcatctggaaaggtgtcaaaacatctggcaaggtggtttgggtg
acagccactttcccctacatcatcctttcgattctgctggtaaggggggccacgctcccc
ggggcctggaggggagttctcttctacttgaaacccaactggcagaaactcctggagaca
ggggtgtgggtggatgcggctgctcagatcttcttctctcttgggcctggctttggagtc
ctgctggcttttgctagctacaacaaattcaacaacaactgttaccaagacgccttggtg
accagtgtggtgaactgcatgacgagcttcgtttcaggatttgtcatcttcaccgtgctc
gggtatatggctgagatgaggaacgaagatgtgtctgaggtggccaaagatgcaggcccc
agcctcctcttcatcacctacgcagaggccatcgccaacatgcccgcgtccaccttcttt
gccatcatcttcttcctgatgttgatcaccctgggcttagacagcacattcgcaggcttg
gagggggtgatcaccgctgtgctggatgagtttccacacttctggtccaagcgccgggag
tggcttgcgctcggcgtggtcatcacctgcttcttgggatctctgatcaccctgactttc
ggaggggcctatgtggtgaagctgctggaggagtttgccacgggacctgcagtgctcacc
gttgccctgatagaggcagttgctgtgttttggttctacggcatcactcagttctgcagt
gatgtgaaggaaatgcttggcttcagccctggatggttttggaggatctgctgggtagct
atcagccctctgtttctcgtgttcatcatctgcagttttttgatgagtccgccacagcta
tggcttttccaatataattatcctcagtggagtatcatcctgggctactgcataggaacc
tcatctttcatttgcatccccacgtacataacttaccggctgatcatcactccggggaca
cttaaggagcgtatcgttaaaggaatcactccagaaacaccgacggaaattccctgtggg
gacatccgcttgaatgctgtgtaa
DBGET
integrated database retrieval system
