Sus scrofa (pig): 641342
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Entry
641342 CDS
T01009
Symbol
NR1D1
Name
(RefSeq) nuclear receptor subfamily 1 group D member 1 isoform X1
KO
K03728
nuclear receptor subfamily 1 group D member 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04710
Circadian rhythm
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09159 Environmental adaptation
04710 Circadian rhythm
641342 (NR1D1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
641342 (NR1D1)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssc03310
]
641342 (NR1D1)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
641342 (NR1D1)
Nuclear receptors [BR:
ssc03310
]
1. Thyroid hormone like
1D. Rev-Erb
641342 (NR1D1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
641342
NCBI-ProteinID:
XP_020922685
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Position
12:22263549..22274131
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AA seq
619 aa
AA seq
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MVVDVPFPCVLLPGGVITYIGSSGSSPSRTSPESLYSDSSNGSFQSLTPGCPTYFPPSPT
GSLTQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSSSFYNGSPPGGLQVALEDSNRVSP
SKSTSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENC
SIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQC
PLETPPTQHPTPGPLGPSPPPAPAPSPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARA
HREIFTYAHDKLGTSPGNFNANHASGSPLATTPHRWESQGCPPAPNDNNIMAAQRHNEAL
NGLRQAPSAYPPAWHPGPAHHSCHQPNSNGHRLCPTHVYPAPEGEAPANSLRQGNSKNVL
LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG
TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE
ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL
RTLNNMHSEKLLSFRVDAQ
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggtggttgacgtccccttcccttgtgttctcctgccaggtggcgtcatcacctacatt
ggctccagcggctcctccccgagccgcaccagccccgagtccctctacagtgacagctcg
aatggcagcttccagtccctgactccaggctgccccacctacttcccaccatcacccact
ggctccctcacccaggacccagctcgctcctttgggagcattccacccagcctgagtgac
gatggttccccttcttcctcttcctcttcctcatcgtcctcctcctcctcctccttctat
aatgggagcccccctggcgggctacaagtggccctggaagacagcaaccgcgtgtccccc
agcaagagcaccagcaacatcaccaagctgaatggcatggtgctgctctgtaaagtgtgt
ggggacgtggcctcgggtttccactatggcgtgcatgcctgtgagggctgcaagggcttt
ttccgtcgaagcatccagcagaacatccagtacaaaaggtgtctgaaaaatgagaactgc
tccatcgtccgcatcaatcgtaaccgctgccagcagtgtcgcttcaagaagtgtctctcc
gtgggcatgtctcgagatgctgtgcgttttgggcgcatccccaaacgagagaagcagcgg
atgctggctgagatgcagagtgccatgaacctggccaacaaccagctgagcagccagtgc
ccgctggagaccccacccacccagcatcccaccccaggccccctgggcccctcaccgccc
ccagccccagccccctcacccctggtgggcttctcgcagttcccacaacagctgacgcct
ccccgatccccaagtcctgagcccacagtggaggatgtgatatcgcaggtcgcccgggcc
caccgagagatcttcacctacgcccatgacaagctgggcacctcacctggcaacttcaat
gccaaccatgcctcaggcagccccctggccaccaccccacatcgctgggaaagtcagggc
tgcccacccgcccccaatgacaacaacatcatggctgcccagcgtcataatgaggccctg
aacggtttacgccaggctccttccgcctaccctcccgcctggcatcctggccctgcccac
cacagctgccaccagcccaacagcaatgggcaccgtctatgccccacccacgtgtaccca
gccccagaaggcgaagcacccgccaacagtctgcgtcagggcaactccaagaacgttctg
ctggcatgtcccatgaacatgtacccgcacggacgcagtgggcgaaccgtgcaagagatc
tgggaggatttctccatgagcttcacacctgccgtgcgggaggtggtggagtttgccaag
cacatccccggcttccgtgatctttctcagcacgaccaggtcaccctgctcaaggctggc
acctttgaggtgctgatggtgcgctttgcgtcgctgttcaacgtgaaggaccagacggtg
atgttcctgagccgcaccacctacagcctgcaggagctcggcgccatgggcatgggcgac
ctgctcaatgccatgttcgacttcagcgagaagctcaactccctggcgcttaccgaggag
gagctgggcctcttcaccgcggtggtgctcgtctcggcagaccgctcgggcatggagaat
tccgcttcggtggagcagctccaggagacgctgctgcgggctcttcgggctctggtgctg
aagaaccggccctcggagacttcccgcttcaccaagctgctgctcaagctgccggacctg
cggaccctgaacaacatgcattccgagaagctgctgtccttccgggtggacgcccagtga
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