Staphylococcus schleiferi 1360-13: LH95_09470
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Entry
LH95_09470 CDS
T04012
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ssch
Staphylococcus schleiferi 1360-13
Pathway
ssch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH95_09470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssch03400
]
LH95_09470
DNA repair and recombination proteins [BR:
ssch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH95_09470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH95_09470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA
P-loop_SecA
AAA_7
Kinesin
AAA_22
HEM4
AAA_25
UB2H
DUF87
AAA_16
UvrD-helicase
Phage_int_SAM_5
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AKS67665
LinkDB
All DBs
Position
complement(2000414..2002396)
Genome browser
AA seq
660 aa
AA seq
DB search
MEHHDFKIASKFDPQGDQPKAIEALVKGIKEGKRHQTLLGATGTGKTFTMSNVIKEVGKP
TLIIAHNKTLAGQLYSEFKAFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEI
DQLRHSATSALFERDDVIIIASVSCIYGLGNPDEYRDLVVSIRVGMEMDRSDLLRKLVDV
QYTRNDIDFKRGTFRVRGDVVEIFPASRDELCIRVEFFGDEIDRISEINYLTGEVLRERE
HFALFPASHFVTREEKMKIAIERIEKELETQLEYLRSENKLLEAQRLEQRTNYDLEMMRE
MGFTSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDQARKK
VLVEHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTNEMVEQIIRPTGLLD
PKIEVRPTKNQIDDLLSEIQERTERNERVLITTLTKKMSEDLTTYLKEAGVKVNYLHSEI
KTLERIEIIRDLRMGTFDVLIGINLLREGLDIPEVSLVVILDADKEGFLRSERSLIQTIG
RAARNDKGEVIMYADKITDSMQVAIDETERRREIQMAYNEAHGIVPQTINKQIHDVISAT
VESDETNEDARTEVPKKMSKKERQKTIENVEKEMKEAAKALDFEKATELRDLLFELKSEG
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggagcatcatgattttaaaattgcttcaaaatttgatccacaaggtgatcaacctaaa
gcaatagaggcgcttgtgaaagggattaaggaaggcaagcgccatcaaacattgttaggg
gctactgggacaggtaaaacctttacaatgagtaatgtgataaaagaggtagggaaacca
acattaattattgctcacaataaaacgctcgcaggacaactctacagtgaatttaaagcc
ttctttcctgagaacagagtagagtattttgtgagttattatgattattatcaacctgag
gcgtatgttccatctactgacacatttatagaaaaagacgcatctattaatgacgaaatt
gatcaactgcgtcactctgcgacaagtgcgttatttgagagagatgatgtcattattatt
gcaagtgtaagctgtatttatggtttagggaatccagatgaatatcgtgacttagtagta
agtattcgtgtcggtatggaaatggaccgcagtgatttattgagaaagcttgttgatgtg
cagtatacacgtaacgatattgattttaaacggggaactttcagagtgcgaggagacgtt
gttgagatatttccggcttcacgtgatgaattatgtattcgggttgaattttttggtgat
gaaattgatcgaattagcgagattaattatttaactggggaagtccttagagaacgagaa
cattttgcgttgttccctgcatcacacttcgtaacacgtgaagaaaaaatgaaaattgca
atcgaaagaattgaaaaagaacttgaaacacaacttgaatatttaagaagtgaaaacaag
cttttagaggcacaacgtttagaacaacgtactaattatgatttagaaatgatgcgagaa
atgggattcacttcagggattgaaaattactctgtccacttaacattaagacctttaggt
tcgacgccgtatacgttgctagactatttcggtgacgattggctagtgatgattgatgaa
tcacatgtgactttaccacaaatacggggtatgtataatggtgaccaagcacgtaaaaag
gtactggttgagcatggctttcgtctaccaagtgcgttagacaatagaccattaaaattt
gaagaatttgaagaaaaaacgaagcaactcgtatatgtttcggcaacaccaggaccttac
gagattgaacatactaacgaaatggtagaacaaattattcgacctacaggcttactggat
cctaaaattgaagtacgacctacgaaaaaccaaatcgacgacctattaagtgaaattcag
gaacgcacagagcgtaatgaacgtgtcttaattacgacattaacgaaaaaaatgagtgaa
gacttaaccacatatcttaaagaagcaggtgttaaagttaattaccttcactcagaaatt
aaaacgcttgaacgtatagaaatcattcgagatttaagaatgggaacatttgatgtgtta
attggtatcaacctgttacgtgaaggtttagatataccggaagtttctttagttgtgatt
ttagatgctgataaagagggctttttacgttctgaacgttcccttattcaaacgattggt
cgtgcagcacgaaatgataaaggtgaagttatcatgtatgctgataaaatcactgactct
atgcaagtcgcaatcgatgaaaccgaacgacgtcgtgaaattcaaatggcttacaacgaa
gcacacggcatagtgcctcaaacaattaataagcaaattcatgatgtgattagtgcgact
gtggaatctgatgagacaaatgaagatgcacgtacagaagtgccgaagaaaatgtcgaaa
aaagagcgtcaaaaaacgatagaaaatgtcgaaaaagaaatgaaagaagcagcaaaagca
ctggatttcgaaaaagcaacagaattaagagatttattattcgaactaaaatcagaaggg
tga
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