Scomber scombrus (Atlantic mackerel): 133977482
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Entry
133977482 CDS
T10651
Name
(RefSeq) transcription factor SOX-13-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133977482
Transcription factors [BR:
ssco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133977482
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Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
AAA_23
Motif
Other DBs
NCBI-GeneID:
133977482
NCBI-ProteinID:
XP_062271647
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Position
3:complement(5763870..5779263)
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AA seq
623 aa
AA seq
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MVEPSPPALHLHSIGDVSMVGVGVKVEQEDSSRGSGVITNAEPLKTSPSRDWSGNQPLEA
RQLTPPLSRSPSEGSPGKELPHRQSPLGLKEVRHDRPEGQSNFKEVMPTIEKLLNADWKE
KLLDKSTVGTGQLKGTPESLAEKELQLLMMINQLTGLREQLLGAHSEQRNMANLLLEKQQ
QQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQVNMPYVMIPAFHPNAQSLQVTSDPQ
MTLPLQPIPCKPTVDYPMQLLSNPNPNPIKRSSGSFRQEASQPLNLTSKPKGLEMGKTPS
PQSMELGSLALQGAYRARDLQREMSHSPPRSALMLSFLGDGDVVTQAIHDAQQLLRNHST
GGRERERDRERERDSSGKMRGEDRQALMSTEDHLSSDSEGALPVSVPGGYAEARPPPSSG
HIKRPMNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSR
QHLERYPDYKYKPRPKRTCIVEGRRLRVGEYKAMMKNRRQEQRATYTHSQTEPQPIHYAH
NDGQYPGGAGSVSVATMPFHPALLEHYLPQAPPVPRRAEGRATPTSLPRERMNERERERP
PYSEGEESDGGERSEGELVLLTD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggttgaacccagccctccagcgctgcacctccactccattggagatgtcagcatggtg
ggtgtcggtgtcaaagtagaacaagaggactccagtagagggagtggagtcattaccaat
gctgaacctcttaagacatctccctcacgtgattggtcaggaaatcagccgctggaggcc
cgtcaactgaccccaccgctgtcccgctccccttcggagggctctccgggtaaagagctg
ccacacaggcaaagcccgctgggactgaaagaggtcaggcacgatcgaccagaaggacaa
tccaacttcaaagaagtaatgcctaccattgagaagctgctgaatgctgactggaaggag
aaacttctggataaaagcacagtggggacaggacaactgaaaggtaccccagagtctttg
gctgagaaggagctccagttgttgatgatgatcaaccagctgaccggcctgagggagcag
ctgctgggagcccactcagagcagaggaacatggctaacctgctgctggagaaacagcag
cagcagatggagctggctcgacaacagcaggaacagatcgccaagcagcagcagcagctg
atccagcagcagcacaagatcaatctgcttcagcagcagatccaggtgaacatgccctac
gtgatgatcccggctttccaccccaacgcccagtccctccaggttacctctgacccccag
atgaccttgcctttgcaaccaatcccctgcaaaccaaccgtggactatcccatgcagctg
ctgtccaaccctaaccccaaccctattaagaggagcagcggttctttccgacaggaagcc
agtcagcccttgaacctgacctccaagcctaaagggctggagatgggaaaaacacccagt
ccacagagcatggagctgggatcgctggcattgcagggggcctacagagccagagatctt
cagagagagatgtcccacagcccgccacgatctgctctcatgttgagtttccttggagac
ggcgatgttgtcacccaggccatccatgatgcccagcagctcctgagaaaccacagcacc
ggagggagagagagggagagagacagagaaagagagagagattcctctggaaagatgcgg
ggtgaagacagacaagcactgatgtccactgaggaccacctcagcagcgactctgagggt
gccctgcccgtctcggtcccaggtggctacgctgaggcccggcctcctccctcctcgggc
cacatcaagagacccatgaatgccttcatggtgtgggccaaggatgagcgcaggaggatc
ctgcaggccttccccgacatgcacaactcctccatcagcaagatcctgggctccaggtgg
aagtccatgtccaaccaggagaagcagccttactacgaagagcaggccaggctgagcagg
cagcatctggagcgctaccccgactacaagtacaaaccccgacccaagcggacctgcatc
gttgagggacggaggctgagggtgggcgagtacaaggccatgatgaagaaccgccgacag
gagcagagagcgacatacacgcacagtcaaacggaaccacagccaatccactatgctcac
aacgatggccagtacccgggaggtgccggctcagtgtcagtggcaaccatgccctttcac
cctgccttattggagcattacctgccgcaggccccgcccgtgccgcgtagggcagagggc
cgagccacgcccacttctctgcccagggagcgaatgaatgaaagagagagagagcggcct
ccgtacagcgaaggagaggagagtgatggtggggagaggagtgaaggggaactggtgctc
ctgacagactga
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