Scomber scombrus (Atlantic mackerel): 133979988
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Entry
133979988 CDS
T10651
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04136
Autophagy - other
ssco04140
Autophagy - animal
ssco04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133979988 (atg16l1)
04136 Autophagy - other
133979988 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
133979988 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133979988 (atg16l1)
03029 Mitochondrial biogenesis [BR:
ssco03029
]
133979988 (atg16l1)
Membrane trafficking [BR:
ssco04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
133979988 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
133979988 (atg16l1)
Mitochondrial biogenesis [BR:
ssco03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
133979988 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR3_2nd
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_DCAF4
NBCH_WD40
WDR90_beta-prop_4th
eIF2A
Beta-prop_EIPR1
Tricorn_2nd
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
WD40_RFWD3
Beta-prop_ACSF4
Lectin_N
AP5B1_middle
NET2A
CCDC39
Beta-prop_DCAF12
Beta-prop_Vps41
KASH_CCD
FKBP15
FPP
Fez1
Motif
Other DBs
NCBI-GeneID:
133979988
NCBI-ProteinID:
XP_062274529
LinkDB
All DBs
Position
5:32833566..32853379
Genome browser
AA seq
619 aa
AA seq
DB search
MAERQAGSSWKKHISEQLKLRDRVQKQAFEEIIHQYLHLLEKADLQAVLSERYQPEKYDQ
QRGHDAGSGADSGRSDALQQEMSQMRIKHQEELTELHKKRGELAQNVIELKNQIQEKDKE
IQSNEATMLDYQQQISKLEGDCRELRSFLQDLERANQTLKDEYDALQITFSALEEKLRKT
TEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQAKLQKELADAAKEPLPLDPDDDIEVL
AEDSGKGGGETSPNRPLSRTSSKKVSQVPPGGLLDSISNIFGVSECVQPGLVPPHSRRRT
ANSFSSPEATEAPSGCCADVRVPCTALHVFDAHDGEVNAVRFSPGSRLLATGGMDRRVKL
WDVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHS
GKVLAARFLLDNARIASGSYDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCIMSGHFD
KKVRFWDSRAETIVQELELLGRVTSLDLNHDRTELLTCTRDDLVKIIDLRANAVRQTFSA
QGFKCGADWTRVTFSPDGSYIAGGSADGALYIWNVLTGKVDKTLDKSHNSAINSVSWSPS
GTFVASVEKGSKAILWSDM
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcaggcggggagctcgtggaagaaacacatctccgagcagctgaagctc
agagaccgagtccagaaacaagcgttcgaggaaatcatccaccagtacctccacctgctg
gagaaagccgaccttcaggctgttctatcagagcgatatcagcctgagaaatatgatcag
cagagaggacacgatgccggttcgggggcagactctggtcgcagtgacgctctgcagcag
gaaatgtctcagatgagaatcaaacatcaagaagaactgacagagctgcacaagaagaga
ggagagctcgctcagaacgtcatcgaactgaaaaatcagattcaagaaaaagacaaagag
atccagagcaacgaggccacgatgttggattatcagcagcagatctctaagctggaggga
gactgtcgggagctccggagcttcctgcaggatctggagagagccaatcagacgctgaag
gacgagtacgacgcgctgcagatcaccttcagcgctctggaggagaagctgaggaaaacc
acggaggacaaccaggagctggtttcccgctggatggccgagaaagctcaggaggcgaac
cgcctcaacgccgagaacgagaaggacagcagacgcagacaagccaaactgcagaaggag
ctggccgacgccgccaaagagccgctgcccctcgacccggacgacgacatcgaggtgctg
gcagaggattctgggaaaggaggcggagagacgtcgccgaaccgaccgctgagccggacg
tccagtaagaaggtgtctcaggtgccacctggaggtctgctggactccatctccaacata
tttggcgtgtctgagtgtgttcagcctggactcgtccctccacactccaggcgtcgaact
gccaactccttctcgtcaccggaggccaccgaggctccgtcgggttgctgcgccgacgtc
cgagtcccgtgcacggcgctgcacgtgttcgacgctcacgacggcgaggtgaacgcggtg
aggttcagccccggctcccgtctcctagcaacaggagggatggaccggcgcgtgaagctg
tgggacgtcgtctcaggtcgctgtgagcctaaaggagctctgaccggcagcaacgcagga
atcaccagcatcgagtttgacagcgcaggctcgtatttgctcgccgcctccaacgacttc
gccagtcggatttggaccgtagacgactacagactgaggcacactctgacgggtcacagc
gggaaggttctggcagctcgcttcctattggacaacgctcgaatcgcctccggaagctac
gaccgaacacttaaactgtgggacctccgcagcaaagtctgtatcaagacggtgtttgca
ggttcgagctgtaacgacattgtgtgcacggagcagtgcatcatgagcggacacttcgat
aagaaggttcgattctgggacagcagggcggagactatagtccaggagttggagctgctg
ggaagggtcacgtctctggacctgaaccacgaccgcacagagctgctcacctgcaccaga
gacgacctggtgaagatcatcgacctgagagccaacgctgtcagacagaccttcagtgct
cagggcttcaagtgtggagccgactggaccagagtcacattcagtcctgacggcagctac
atcgccggaggatcagctgacggcgctttgtacatctggaacgttctgacgggaaaggtc
gacaaaactctggacaaaagccacaactctgccatcaactcagtgtcctggtcgccgtcg
ggaacgttcgtcgccagcgtggaaaaaggcagtaaagccatcctgtggtctgacatgtga
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