Scomber scombrus (Atlantic mackerel): 133983642
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Entry
133983642 CDS
T10651
Symbol
phf1
Name
(RefSeq) PHD finger protein 1
KO
K11467
PHD finger protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
133983642 (phf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133983642 (phf1)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133983642 (phf1)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
133983642 (phf1)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
133983642 (phf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_2
PHD
Mtf2_C
PHD_ash2p_like
PHD_2
Chromo
DUF4537
API5
Motif
Other DBs
NCBI-GeneID:
133983642
NCBI-ProteinID:
XP_062278777
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All DBs
Position
7:complement(24191672..24208703)
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AA seq
562 aa
AA seq
DB search
MGGVSEGDDVLARWSDGLLYLGNVKRVDGVKQCCLVRFEDNSEFWVLRKDIHSFAAGVEE
LCCICDAPPLKEPLINCLKCRHGYHPECHTPTIEPEADSDSWICRQCVFAVATKRGGALK
RGRFARLMQFMKLRLPYQLSSLDWDPQHLTNQQQCYCYCAGPGEWNLKMLQCGSCGQWFH
EACTQCLTKPLLYGDRFYQFQCSVCSKGPETIQRLPMTWVDLAHLVLYHLSLCCKRKYFD
FDHEILSFTNENWDSLLLGALSDTPRQDRCHNLLNALNSHKDRFVSGKEIKKKKCLFGLQ
VRAPPPLTSDSSPLITDPPTNITHRRSPLSLPCQRRVGGPEPRKSKRRIIETQACPPPVS
ANPIEVLPCCHGYMGGASLYTSRKSEEELNLSSPPKRMYALYHTTYNGNTALSRSLHHYN
SVDDTCRVPPPCYQYPLNANGSHHHHHIHQHHHSHQHNHNHQNHQNHHNHQNHHNHQNQH
QPGQKQLEPLLPYQAGMGGGGGVGGGGGGGGGGGGGGGGGGGGDGTVARSWGGGEAVRIL
ARRVTPDGKVQYLVEWENVSLY
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggggggagtaagtgagggagatgatgtgttggctcgatggagtgatggactactgtac
ctcggcaatgtgaaaagagtagatggagtcaagcagtgttgtctggtgagatttgaggac
aactcagagttctgggtactaagaaaggacattcactcattcgctgctggagtggaagaa
ctttgctgtatttgtgacgctccgcctcttaaagaacccctcataaattgtcttaaatgt
cgccacggttatcatccagagtgccacacgccaaccatcgaaccggaagctgacagcgat
tcgtggatatgtcggcaatgtgtctttgcagtcgcaaccaagagaggcggggcactcaaa
cgaggacgcttcgcccggctcatgcagtttatgaaactccggctcccctatcagctgtca
tctttagactgggacccgcagcacctgaccaatcagcaacagtgttactgctactgtgcc
ggacctggagagtggaacctgaagatgttacagtgtggaagttgtggccagtggttccac
gaggcctgcacgcagtgtctaaccaagccattactgtacggtgacaggttttatcaattc
cagtgctctgtatgttcaaaaggaccagagaccatccaaagactacccatgacctgggtg
gatttggctcatttagtgctctaccatctctccctgtgctgcaagaggaaatactttgat
tttgaccatgaaatcctgtctttcaccaatgagaattgggactcgttgctcctaggcgcg
ctctctgacacgccaaggcaagaccgctgtcacaatctcctcaacgctctgaactcccac
aaggacaggtttgtctctggaaaagagatcaagaagaagaagtgtctttttgggcttcag
gtccgagccccgccaccgctgacgtccgattcttcgcccctcatcaccgacccacctacc
aacatcacgcaccggagaagcccgctgtcactaccctgccaaaggagagtgggggggcca
gagccacgtaaatcaaagcgtcgtatcattgagacacaggcttgtccacccccagtgtct
gccaaccccattgaggtactgccatgttgccatggctacatgggaggggccagcctttac
acctccaggaagtcagaggaggagcttaacttgagctctcccccaaagcggatgtatgcc
ctctatcacaccacttacaacggaaacactgcgctctccaggagtctccatcactacaac
agtgtggatgacacctgcagggtaccaccaccctgctaccagtaccctctaaacgccaac
ggcagccatcaccaccaccacatccaccagcatcatcacagccaccaacacaaccacaac
caccaaaaccaccaaaaccaccacaaccatcaaaaccaccacaaccaccaaaaccaacac
cagccagggcagaagcagctggagcccctcctaccctaccaggctggcatgggcggaggg
ggtggcgtaggtggaggtggtggaggaggaggaggtggaggaggaggaggaggtggtggt
ggagggggagacgggacagtggccaggagctggggaggaggggaggcggtgagaatcttg
gcgagacgcgtcacgccagacgggaaggtgcagtaccttgtggagtgggagaacgtgagt
ttgtactga
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