Scomber scombrus (Atlantic mackerel): 133985452
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Entry
133985452 CDS
T10651
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
133985452 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133985452 (kdm2ab)
04121 Ubiquitin system [BR:
ssco04121
]
133985452 (kdm2ab)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133985452 (kdm2ab)
Enzymes [BR:
ssco01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
133985452 (kdm2ab)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
133985452 (kdm2ab)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133985452 (kdm2ab)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
133985452 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
133985452 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
Cupin_8
LRR_8
LRR_6
DUF7885
C1_1
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
133985452
NCBI-ProteinID:
XP_062281054
LinkDB
All DBs
Position
9:15202644..15219846
Genome browser
AA seq
1310 aa
AA seq
DB search
MKLYLFFLEIMEDPTRYSKRLRTGTRRRYQDDGISDDEIEGKRTFDLDEKLQCCRFGSDL
IKHMEGKDFTFEYIQKEGLRDPIVFEKADGLGIQMPDSDFSVSDVKLFVGSRRIVDVMDV
NTQKGIEMSMAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVQRPASVDLIDWVDNMW
PRHLKERQRDSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHVLRGGKVFWL
IPPSPQNLEMYENWVLSGKQGDIFLGDKCHDCQRIELKQGNTFLIPSGWIHAVYTPEDTL
VFGGNFLHSFNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNVSHLTPE
FQKYSLGIGLTEADLESNDHTRNGASNGVDSDAENQDIKLKEEEEIKEEEGAEIVKPQQI
LTPFELEGLWNLLGKLEELPAHKKCVPAGIRNAAALLEDMRSLLKEHANDNPKLSYTGEP
IVKWPKRPSWYQPPTPPPPVIYRPRLGPTLHKPLGQKSTKRSSISALRRRRVRCKRCAAC
CRKECGTCQYCHDMRKFGGPGRMKKSCIMRQCLAPALPNTARCAICGEGESEESNPSAHT
LMECSVCSQIAHRQCIKEPGEGKVNKDLPSCWECPKCYQGKDSASESSSDEESGESEGST
SLPPSKLAYREGIGVGERVRRTRRGRPPARQIAPPPSQRLLLQHQQNRKRANALELRLKK
RIKLERSKILAKQSSLDRSPRLLSSRLLSRLRSPTSRLSQGRGRSTTLTSGSPYHSSPGG
SGSFQQQQSSTGLVLESTGEPRRGRGRGVRLRGGGAGRGIIGGRSHGELEEDSEDSSSSS
SSNSSSSDDDEEEERGQNNGRGGDKENQPQSRQGGRRAKEREEEESEAANQNGAEEEDEE
EMEQDSQMVDKDGSYLKVTLQRPTKAKRDPSAIVPKLEAIASQTAASTIHNPTRPLARPP
IRNRFPDQHSSRPPLTRSKHTDTRPSHPERLDASKRARLSRPAKLSNGASSSSSTELPHL
RIPLSALQEGGSEADRDSSGSGPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKR
LWSRIDLSIKRTISPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPGLKDLMLSGCC
WSSISALCSSGCPLLRSLDLRYADGVKDSQIRDLVTPPGCDNRSQLRSMQCLRLAGLDIS
DSTLRLVIRHMPHLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLAELNLGGCSKLTDTCL
KYLRRLSCISLLDLRGCKGVSRKACEAFISDLSVNTLYCLSDEKLIQRIS
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgaaactttacctcttttttttagagattatggaggatccaacacggtacagcaaaaga
ttgcgtacaggtacgcggcgtcgttaccaggacgatgggatctcagatgatgaaatcgaa
gggaagcgaacgttcgacctggatgaaaagttgcagtgctgcaggtttggctctgacttg
atcaaacacatggagggcaaagatttcacatttgaatacatccagaaggaagggctaagg
gaccccattgtctttgagaaagctgatggcctcggcattcaaatgccagactctgatttc
agtgtgagtgatgtcaagttgtttgttggtagtcgacgcattgtagacgtgatggacgtg
aacactcagaagggaattgagatgtcaatggctcagtggcggcgctactatgagacgcca
ccatcagaaagagagaaactctacaatgtcatcagcctggagttcagccacaccagactg
gagaatctagtacaaagaccagcctcggtggaccttattgactgggtggacaacatgtgg
ccccgccatctcaaggagagacagagggactccactaacgccatcatagacatgcactat
cccaaagtacagaagtattgcctaatgagtgtacagggctgcttcacagatttccatatt
gactttggtggcacttcagtctggtaccatgtactccgaggcggaaaggtgttctggttg
atcccaccctcaccccagaacctggagatgtatgagaactgggttttatcaggaaaacag
ggagacatcttcttgggggacaagtgtcatgactgtcagaggatcgagctcaagcagggc
aacaccttcttgatcccgtcaggctggatccatgctgtgtacaccccagaggacacgttg
gtgtttgggggaaatttcctccacagctttaacattcccatgcagctcaacatctacagc
attgaggatcgcacacgggtgccagcaaagttccgctacccgttctactatgagatgtgc
tggtacgtcctggagagatacctgtactgtctgactaacgtctcccacctcacccctgag
ttccaaaaatactccctaggcataggactgactgaagctgacctggaatcaaatgatcac
accaggaatggcgcctccaatggagttgacagtgacgctgaaaaccaggatatcaagttg
aaagaggaagaggaaatcaaagaagaagagggagctgaaattgtcaaacctcagcaaata
ctgaccccctttgagctggagggactgtggaacctcttagggaagctggaggagctgcca
gcacacaaaaagtgtgtccctgcagggatcaggaatgctgcagctctgctagaggacatg
aggagtcttctgaaggagcatgccaacgataaccccaagctgtcctacactggagagcca
attgtcaagtggcccaaaaggccatcatggtaccagcctccaacacctcctccccctgtg
atttaccgtccccgcttgggccccaccctccacaagcctctgggtcagaaatccaccaaa
cgctcctccatctctgccctgaggcggagacgggtgaggtgcaagcgctgtgcggcctgc
tgcaggaaggagtgcggcacgtgccagtactgccacgacatgaggaagtttggcggccct
ggacgcatgaagaagagctgcatcatgagacagtgtctagcaccggccttgccgaacaca
gcacgatgtgccatatgtggagaaggagaatcagaggagtcgaacccaagcgctcacacg
cttatggagtgctctgtctgctcccagattgcccatcgtcaatgcattaaggaacctggt
gaggggaaggttaataaggatttgccgagctgctgggaatgtccaaaatgttaccaaggc
aaagactccgcgtcagagtcttccagtgatgaggaaagtggtgagtcggagggctcaacc
tctttgccaccgtccaaacttgcctatcgggaaggcattggtgtgggcgaaagggtgaga
cgaacgagacgtggcagacccccagcacgacagatagcaccaccaccctctcagagactg
ctactgcagcatcaacagaaccgcaaacgagcaaatgcactggagctcagactcaagaag
aggataaaactggaacgcagtaaaatcttagcgaaacaatcgtctctagatcgttctccc
aggctgctgagctccagactactgtcccggctacgctctccaaccagcagactatctcag
ggcagaggcagaagcaccaccttgaccagtggctccccttaccacagctctccaggaggg
tctggttctttccagcagcagcagtcttccacaggtctggtacttgagtcgacgggtgag
ccccgcagagggaggggaagaggggtgaggctgcgagggggaggagcaggaagaggaatc
ataggtggtcgaagccatggagagttggaggaggatagcgaggacagcagcagcagcagc
agttccaacagcagcagcagcgacgatgacgaggaagaggagagggggcagaacaacggg
aggggaggcgataaagagaaccagccgcaatcgaggcaagggggacggagggccaaagaa
agagaagaggaagagagcgaggcagccaaccaaaatggtgcagaggaggaggatgaggag
gagatggagcaggacagtcaaatggttgacaaagacggctcatatcttaaagtgacactc
caaaggccgactaaggccaagagagacccgtcagccattgtccccaaattagaggctatc
gcctctcaaactgccgcttccacaatacacaacccaaccagacccctcgccagaccgccc
atcagaaatcggtttcccgatcaacactccagtaggccaccactcactcgcagtaaacac
acagacactcggccctcccatccagagcggctggacgcctctaaaagagcgaggctgagc
cgaccggctaaactaagcaatggtgcctcctcttcttcatccactgagcttcctcatctg
cgcatcccactttcagccttgcaggagggtgggagtgaggcagacagggacagcagtggg
agtgggccgggttgtgagagggaggtgtgggtttctgtcttccgctacttaagtcgagca
gatctctgcgtttgcatggctgtctgcaagaactggtacaaatggtgcttggacaagcgg
ctctggtcgcgcattgacctgagcatcaagcgtaccatcagtcctcaggccctaacaggc
atcataaagagacagccagtcacactcgatctctcctggaccaacatctccaaaaaacag
ctcaactggcttgttggccgcctgcctgggctgaaggacctgatgctgtcaggttgctgt
tggtcatctatttcagctctctgctcctctggttgccccctcctccgttctctggacctg
cggtatgcagatggggtcaaagattctcagatcagggacttagttaccccaccaggctgt
gacaatcgcagccagctgcggagcatgcaatgtctgcgactagctggcctggacatcagc
gactccactctacgcctggtgatccgccacatgccccacttaacaaaactggacctttcc
cactgcaacagccttacagaccactccatcaacctgctgactgcagtgggctcgtccacc
cgaaacacactcgcagagctcaacctgggaggttgcagtaaactgacagacacgtgtctc
aagtatctgcgacgcctgtcttgcatatcattgctcgacctgcgaggctgtaaaggagtc
tcccgcaaggcctgtgaggccttcatttctgacctgtcagtcaacacactctactgccta
tcggatgaaaaactgatccagaggatatcctaa
DBGET
integrated database retrieval system
