Scomber scombrus (Atlantic mackerel): 133986981
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Entry
133986981 CDS
T10651
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133986981 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133986981 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133986981 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssco00535
]
133986981 (col9a1a)
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Others
133986981 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133986981
NCBI-ProteinID:
XP_062282339
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Position
2:complement(32900710..32920614)
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AA seq
687 aa
AA seq
DB search
MALYRICRESLLLLLLQIVLICSAQRGPVGPRGPPGPPGVGGVPGVDGIDGDRGEDATVD
GGPGLDGDNGKDGLAGVAGLPGADGPVGPPGDPGAVGAQGPKGDPGARGPTGELGVGPDG
LDGIPGTDGLPGELGKVGPPGARGRRGQVGPPGPAGARGPPAVYQGEDLCPNACPASLNG
HPGLSGMKGHKGIKGESGEPGRQGHKGEEGDQGPTGEVGSQGLPGPGGKRGLSGIMGSKG
DKGPRGKPGDLGPQGILGGPGDPGQRGKIGETGPRGVSGERGPSGIRGVPGPKGEAGLAG
PDAREGIPGLPGSKGLPGKNGAPGDAGTQGLPGMPGSYGQKGVSGSKGNTGDPGVVGQMG
SSGKQGERGEQGEVGPVGARGGPGERGERGNVGPIGAPGGRGSKGDLGLPGLPGPAGYRG
QKGDRGAVGLDGPKGDQGSAGSEGTPGDSGELGDQGELGEKGSTGPPGETGNKGPEGGRG
QQGKEGKSGQLGPRGMQGDMGVPGLPGVQGAAGKSATDTHIKQVCMRVMQEQLAQLAASL
SRPESGIAGIPGPPGPPGPPGPSGENGFPGHTGSRGLPGLKGPPGLLGRKGIKGDQGDRG
DRGPTERGTKGAPGAPGLPGNAGRAAYGTDGRDGQRGPRGVPGNHGVPGPPGPAGLNGYC
ESSQCILPMVASPVSAKDTSMKGPNEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctctacaggatctgtcgggagtctttgctgttgcttttactgcaaattgtgcta
atttgctccgctcagaggggcccagtcggtcccagaggacccccagggccccccggagta
ggtggcgttcctggagtggatggtattgatggcgacagaggagaggacgcaacagtggat
ggcggaccaggccttgatggtgacaacggcaaagacggacttgccggagttgcaggtctt
ccaggcgcagatggaccagttggacctcctggagatccaggtgcagtgggtgcacaaggg
ccaaaaggggatcctggagcacgtggccctactggagagctcggtgtaggacctgatggg
cttgatggtattccagggacagatgggctaccaggtgaactgggtaaagttggaccccct
ggagcaagaggccggagaggtcaagtgggtcctcctggtcctgctggggctcgggggcct
cccgcagtgtatcaaggcgaggacctgtgtcccaatgcctgtcctgctagtctgaatgga
catcctggtctctctggcatgaagggccacaaagggattaagggtgaatctggtgagcct
ggaagacaaggacacaagggagaggagggtgaccaaggaccaacaggggaagtcggatct
caaggactaccaggcccaggtggaaaaagaggcctctcaggaataatgggctccaaaggt
gacaagggacctcgtggaaaacctggtgatttaggtcctcagggtatccttggaggcccg
ggtgatcctggtcaaagaggaaaaataggtgaaaccgggccaaggggagtgtcgggggaa
cgaggtccatctggaatcagaggagtgccagggccaaaaggagaggctggcctcgctggt
ccagatgctcgtgaaggaatacccggactgccagggtcgaagggtcttccagggaaaaat
ggggctccaggtgatgccggcactcaaggtctgcctggtatgccaggctcttatggccag
aaaggtgtcagtggttcgaagggtaacacaggtgatccaggagttgttggacagatggga
tcttcagggaaacaaggcgagcgtggcgagcagggagaagtgggacctgttggagcccga
ggaggaccaggtgaacgaggagaaagaggaaatgttggacctataggagcaccgggaggc
aggggaagcaagggggatctgggacttccaggacttcctggtcccgctggttatcgtggc
cagaagggcgacagaggtgcagttggtctggatggtccaaagggagatcagggatctgcc
ggctctgagggaacaccaggagatagtggagaactgggtgatcaaggtgaactaggagag
aaaggatcgactggcccaccaggtgagacaggaaataaaggacccgagggcggccgagga
cagcaggggaaagagggcaaatcaggccaactaggaccccgtggcatgcagggcgacatg
ggggtaccaggtcttccaggggtgcagggagcagcgggaaaatcagcgacagatacacat
atcaaacaagtctgcatgagagtaatgcaagagcagctggctcagctagccgccagcctg
agtaggcctgagtcaggtattgctggaatacctggtcccccgggccctcctggacctcca
ggcccttctggagagaacggtttccctggacacaccggatcacgaggactacccggtctg
aagggtccacctgggctactgggtcgcaaaggcatcaaaggtgaccagggtgacagaggg
gacagaggacccacagagagaggaaccaaaggagcaccgggcgctcctggtctgccaggt
aatgccggcagagcagcttatggcacagatggccgtgacggacagcggggacctcgtggc
gttcccggtaatcacggcgttcctgggcctcctggtcccgccggtctcaatggttactgt
gagtcgtcacagtgcattctgcccatggtggcgtcgccggtttcggcaaaggacaccagc
atgaagggccccaatgagatgtga
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