Scomber scombrus (Atlantic mackerel): 133987218
Help
Entry
133987218 CDS
T10651
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133987218 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133987218 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133987218 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssco00535
]
133987218 (col9a3)
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Others
133987218 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133987218
NCBI-ProteinID:
XP_062282497
LinkDB
All DBs
Position
10:22233310..22247651
Genome browser
AA seq
678 aa
AA seq
DB search
MAVFSALWVLLLCQLLTSSSAQRPGPRGSSGPPGPPGEAGRDGTDGKPGPAGLPGKAGTK
GKGGLPGTAGKPGLPGLPGVDGLTGPDGPAGKDGPPGEAGDAGPAGPPGPPGRGRSGAAG
LPGTNGLPGGVGPQGPAGAEGLAGLPGPAGSDGPPGLPGTLHDLNGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGERGELGKDGEKGDAGPPGPPGIPGTVGLQGPRGLRGLPGPMGSVG
DRGLPGFRGKPGIAGIIGKTGDAGEKGPQGFRGPKGEIGKIGAKGGPGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDAGRHGVVGEKGPNGLPGLQGKGGAKGSKGEVGDPGKAGETGPSG
EPGIPGDIGIPGERGIAGPRGVAGAIGPLGNPGPQGVKGFQGGKGALGDPGLPGPTGIRG
EFGDRGPVGASGPKGDMGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGVTGPQG
ELGARGVPGKEGPMGFQGEQGVPGIPGKTGVPGKLSSEQHIRELCGSMIDDQIAQLAANL
RRPLAPGNVGRPGRAGPQGKPGVTGSIGHPGSRGPPGYRGLPGELGDPGPRGDVGEAGDK
GPVGKAIEGPTGDQGYPGLPGVPGIVKDGRDGSPGDPGEPGESGRVGRTGHQGTPGICDT
SACQGASVAGKSSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgttctccgctctttgggtgctcttactgtgccagcttttgacatcatcctct
gcccagaggccgggccccagaggatcttctgggccaccaggacccccaggggaagcagga
agggatggcactgatggcaaacctgggccagctggactaccagggaaagcaggtactaaa
ggaaagggaggactaccaggaacagcaggaaagccaggccttccaggacttccaggggtg
gacggtttgacaggtcccgacggccctgctggcaaggatggacccccaggggaggcaggt
gatgctggaccagctgggccacctggacctcctggcagagggagatcaggagctgccggg
ttacctggaaccaatgggttgccaggtggagtcggaccccagggtccagcgggcgctgag
ggtcttgcaggacttcccggacctgctggctctgatggaccaccaggtcttcctggtact
cttcatgatctcaacggtgaccttctgtgtcctgcaatctgcccccctggtccctctggt
cctcctgggatgccaggattcaagggtcacacaggacataaaggagaaaggggagagctt
gggaaagatggagaaaagggtgatgctggtccacctggtccaccaggtattcccggtaca
gtgggtctgcagggcccacgtggtctaagaggtttgccaggcccaatgggatcagtggga
gacagaggcctgccaggattcagaggaaagccaggcattgccggcatcattggaaagaca
ggtgatgctggtgaaaaggggccacagggtttcagaggtcccaaaggagaaattggtaaa
attggtgctaaaggaggtcctggtggagcaggacccaaaggggagcctggtattcctggc
agggatggcaaagatggcacaccaggattggatggcgagaagggtgatgctgggcgccat
ggagtagttggagaaaaaggaccaaatggccttcctggcctacaaggaaagggtggcgca
aagggatccaaaggagaagtcggtgacccagggaaggctggagagacgggaccctctgga
gagccaggtattcctggtgacattggcatcccaggagagaggggaatagcaggacccaga
ggagtagctggagctattggaccactaggcaaccctggtcctcagggagtgaaaggcttc
caggggggaaaaggagccttgggggatccaggtcttccaggtccaacaggaatccgtggg
gagtttggagataggggtccagtcggagcttctggacctaaaggagacatgggcgtggca
ggaagtgatggtttacctggagagaacggagaacctggaccttttggaccagttggacaa
aaaggagagtcagggaaacggggtgaattgggacctaaaggcgtgacaggtccacaaggg
gaacttggagcaagaggggttccaggaaaagaaggcccaatgggcttccaaggggaacaa
ggtgtgcctggaattccaggaaagacaggtgtacctggtaaactgtcaagcgaacagcac
atcagagagctgtgtggctcaatgatcgatgatcagattgcacagctggctgctaacctt
agaagacccctggctcctggaaatgtgggtcgccctggacgtgctggacctcaaggaaag
ccaggagttactggctctattggacatccgggttcccgtggaccaccagggtacagaggc
ctcccaggagagcttggagaccctggtcccagaggtgatgttggtgaagcaggtgataag
ggacctgtcggcaaagcgattgaagggcctactggagaccaaggatacccaggtcttcct
ggagtacctggaattgtcaaagacgggcgtgatggatctcccggagatccaggtgagcct
ggagagtcaggcagggtaggtaggactgggcaccagggaactcctggaatctgtgacaca
tcagcgtgccagggagcatcagtcgctgggaaatcatccaaccccaaaaaccattaa
DBGET
integrated database retrieval system
