Scomber scombrus (Atlantic mackerel): 133992127
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Entry
133992127 CDS
T10651
Name
(RefSeq) calpain-1 catalytic subunit-like isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04141
Protein processing in endoplasmic reticulum
ssco04210
Apoptosis
ssco04217
Necroptosis
ssco04218
Cellular senescence
ssco04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133992127
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
133992127
04217 Necroptosis
133992127
04218 Cellular senescence
133992127
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133992127
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
133992127
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
133992127
Peptidases and inhibitors [BR:
ssco01002
]
Cysteine peptidases
Family C2: calpain family
133992127
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Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
133992127
NCBI-ProteinID:
XP_062286802
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Position
12:10668440..10677727
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AA seq
724 aa
AA seq
DB search
MTFSVLFCLIPPLSLPIYPSMYPVGGISATIYANRLREEGMGTNEQAVHFANQDYEALKQ
ECVESGCLFEDPCFPAEPPSLGFKELAPFSSKTRDVEWMRPTELTGDPQFIVGGATRTDI
CQGALGDCWLLAAIGSLTLNEKLLHRVVPHGQSFQDDYAGIFHFQFWQFGEWVDVVIDDR
LPVKDGELMFVHSAEGNEFWSALLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYEL
RKAPRDLYRIIGKALERGSLLGCSIDITSAFDMEAVTFKKLVKGHAYSVTALKEVHFRGN
MERLIRVRNPWGQVEWTGAWSDNSPEWDEIDPSEQEDLHLQMEDGEFWMSFSEFLRQFSR
IEICNLTADALSDDGMSHWNTTKFYGTWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDD
PEDDEVACSFLVALMQKDRRRYRRQGQDMHTIGFAIYEIPEEFRGCQNVHLKKNFFLSHS
SCARSETFINLREVSTRLRLPPGEYLIVPSTFEPSQEADFVLRVFTEKQSETEELDDVVS
AELEDEDEITEDDIDDSFKSMFAQLAGEDMEISIRELRTILNRVVSRHKDLKTDGFSMES
CRTMVNLMDKDGSARLGLVEFQLLWNKIRKWLVIFRDFDLDKSGAMSSYEMRLAVEATGF
KLNNKLNQVLVARYAENEMIDFDNFICCLVKLEAMFRAFKQFDTEESGEVEMNLTEWLYL
TMCG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttctgttcttttttgtctcattcctcctctcagcctgcctatatatccaagt
atgtatccagttggagggatatctgcaaccatatacgccaaccggctacgggaagagggc
atgggcaccaatgagcaggcagtgcactttgccaaccaggactatgaggcactgaagcaa
gaatgtgtggagtcgggctgcctgtttgaagatccctgtttccccgctgagcccccatcc
ctgggcttcaaggagctcgctcccttttcctccaaaactagagatgtggagtggatgagg
cctacggaactgacaggtgaccctcagttcattgttggtggagccactagaacggatatc
tgtcagggagcgctgggtgactgctggctcttggcagccatcggctctctcaccctgaat
gagaagctccttcatcgggttgtcccacacggccagtccttccaagacgactacgctgga
atcttccactttcagttctggcagtttggcgagtgggtggatgtcgtgatagatgaccgg
ttgcctgtcaaagatggagagctcatgtttgttcattctgctgaaggcaatgaattctgg
agtgcactcctggagaaagcttatgccaagctgaatggctcctatgaggctctgtctgga
ggaagcaccactgaggggttcgaggactttacaggtggtgtgtctgagatgtatgagctc
cgcaaagcacccagagatctttacaggataattggaaaagctctggagagaggctccctg
ctgggctgctcaatcgatatcaccagtgccttcgacatggaggctgttacattcaagaag
cttgtgaaaggccacgcctactcagtcactgcattgaaggaggttcatttccgtggcaac
atggaacgtctaattcgagtacgtaatccttggggtcaggtggagtggactggtgcctgg
agtgacaactcccctgaatgggatgagatcgacccgtctgagcaagaagacctgcaccta
cagatggaagatggagagttctggatgtccttcagtgaattcttgaggcagttttcacgt
atagagatctgtaacttgactgctgacgccctgagtgacgatggtatgagccactggaac
accacaaagttttatggtacatggaggcgaggcagcactgctggaggctgcaggaaccat
cccaacacgttttggatcaaccctcagtataagatcacgttgcttgaggaggatgatgac
ccagaggacgatgaggtggcatgcagtttcttggtagctctcatgcagaaggaccgccgc
agatatcggcgccagggtcaggatatgcacactattggctttgctatctatgagattcca
gaagagtttagaggctgccagaatgtccatttgaagaagaatttctttttgagccattca
tcgtgtgctcgctctgagaccttcattaacctgcgagaggtgagcacacggctgcgacta
cctcctggagaatacctcattgtcccctccacctttgagcccagtcaagaggcggacttt
gtcctcagagtcttcactgagaagcaatcagaaacagaagaactggacgatgttgtctct
gctgaattggaagatgaggatgaaataactgaagatgacattgatgactcttttaagtcc
atgtttgctcagctggcaggagaggatatggagatttctattcgggagctgaggactatt
ctaaacagagtcgtctcccggcacaaggatctgaagactgatggcttcagcatggaatcc
tgcagaactatggtcaacctgatggacaaagatggaagtgcccgtttagggttggtggag
tttcagctcctttggaataagatccgaaagtggctggtcatttttagagactttgacctc
gacaagtcaggggccatgagttcatatgagatgcgtcttgctgtggaggcaacaggtttt
aaattgaataacaaactgaaccaggttctggttgcccggtatgcagagaatgagatgatt
gactttgacaacttcatctgctgcttagtcaaacttgaagccatgtttagggctttcaag
cagtttgacacggaggagtcaggagaagttgagatgaatctcacagagtggctttacctt
accatgtgtggttga
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