Scomber scombrus (Atlantic mackerel): 133994918
Help
Entry
133994918 CDS
T10651
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
133994918 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133994918
NCBI-ProteinID:
XP_062290140
LinkDB
All DBs
Position
15:25801600..25812715
Genome browser
AA seq
1080 aa
AA seq
DB search
MDYQFPQQLFPSFFKCGPPDLVLKHSGGNWGCYDQVKPEGGSGPLSSWTFTSKHQVRGET
WRHTEPVPVPLLSPKNHYLWPSKPPDPQDFTEHMRNFFMDHGHDAFGCMSEILDANFNFT
RGKKEIYRKDSVSMWKVRDSMDLLKYNICQQTRRSKTLEAYCTLLSDIVHDIPPELLGSL
LHEELTEQRESMLFSEGATGGALNYIPFSQSDSSSGSQHGCLIYPGNQGLDRLNFHRVEL
QHQRGISSCVDATSSHPFSFKLKGRVRQISSASLLDDCCVAVRSDHLCGVWRLNQSSEPR
LLQVINTREVATCVSVSPHVLGEVLVANESGAANLWSVGKGIQKVREEDSNLYFNAKSTW
RWCEFSAHPRVMLYADRTGVELSDIRVSPTSTHTLFRISNTSKCRNGERLILSKYLEDVN
PFHHLITTQYSAYIMDERCPCVPMLKWDHLMQSPPMFCHVVPGSASSGSAAAMSGTAKVL
LGSQSSQEITMLQYSGGRAEACSSRGPPQALLRPRDSLRHLPMQLPHRLETATNRLSSPA
AGLTCIQKRGGGGGEEECICVLQLTEAGDIFYQVLEPEQSDTSRNPAADDESASQQLPLS
QAALTDSQTVASDTSSDEGIIGPTQGLSMQQFVPETQNVYSDTSADDSEAERKRRRLKKL
NLEVVVNDDPELDEGSGSDAGVKDGPIRTANADGAVEERVNGSSSLSHVVPTKQQTPEEL
SDTTLIKWKHWLQKVIHKSHQKNPHPRHLPHFSIPTEDVLQPSKNAETDRTEEKRVQSVR
RDLRGCMSNRSLLVNDTVSASARPEETVPIPDPVDTGVWADPLSQRLTTAWQGDEAWRAW
WVEKLGLNREEKVQALKRKRRREKEARRASGQSLVLSGSFTSSVSYQSELDYFSESTGWS
SEASQRGLSDSEGMGPSQLKSFMEQETEIAETPNAVQTDTPGPTPTATPQKTKEKQSDQQ
TPRTPSLSQTLPPESTPASQKRRRRPAEDYLSSLFAPQDHPSQHDGHFLDEGGVTQPTAQ
LVASLPSHQPRSAQRSVRVDLSQDSWSGFSQSLPISQSSQGRPGLSQASQAKKKKSRMGF
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggattaccaattcccacagcagctttttccttcgttttttaaatgtggaccgccggac
ttggttctgaaacacagtggaggaaactggggctgctacgaccaagtcaaacctgagggc
ggctctggtcctctctccagctggacctttacatccaaacatcaggttagaggagagaca
tggcgacacacagagcctgtgcccgttcccctcctgtcccccaaaaaccattacctctgg
ccttccaagcctccagatccacaggacttcacagaacacatgcggaacttcttcatggat
cacggccacgacgccttcgggtgcatgagtgaaattctggatgcaaatttcaacttcaca
cgaggaaagaaagagatatatcgcaaggactcagtcagcatgtggaaggtcagagactcc
atggacttgctaaagtataacatatgccagcagacacgtcgctccaaaaccctggaggcg
tactgcacactgctgtcagacatcgtgcacgacatcccccccgagctgctgggctctctg
ctgcacgaggagctgacggagcagagagaaagcatgctgttctctgaaggagccacaggg
ggcgcactgaactacatccccttctcacagagtgacagcagcagcggctctcagcacggc
tgcctcatctaccccggaaaccaaggactggaccgcctcaacttccacagagtggagctg
cagcaccaaagaggaatttcttcctgcgtggacgccaccagcagtcacccgttcagcttc
aagctgaaaggccgcgtcagacagatcagctccgcatcgctccttgacgactgttgtgtt
gctgtgcgctcagatcacctgtgcggagtttggagattaaaccaaagcagcgaacctcgt
ttgctgcaggtcatcaacaccagagaggtcgcgacctgcgtcagcgtcagtcctcatgtt
ttaggtgaagttctcgtggcgaacgagagcggagcagcaaacctgtggagcgtgggcaaa
gggatacagaaggttcgggaggaggacagcaacctgtacttcaacgccaagtcaacttgg
cgatggtgcgagttttccgcccacccgagggtgatgctgtacgccgacaggacaggggtg
gagctctctgacatcagggtgagtccaacctccactcacactctgtttcgtatcagcaac
acctccaagtgtcgcaacggagagagactcatcctgtccaaatacctggaagacgtgaat
cccttccaccacctcatcaccactcagtactcggcctacatcatggacgagcgttgcccg
tgcgtgccaatgctgaagtgggatcacctgatgcagtccccaccgatgttctgtcacgtc
gtccctggctccgcctcatccggctcggcagcggccatgtccggaaccgctaaggtcctg
ctcggctcccaaagctcccaggaaattacaatgctgcagtactcaggaggcagagcagag
gcctgttccagtcgaggtcctcctcaggctctgctcagacccagagacagtctcagacac
cttcctatgcagctccctcaccgcctggagacggcaaccaacagactgtcctcacctgct
gcaggtctgacttgtatccagaagagaggaggaggaggaggtgaggaggagtgtatctgc
gtcctacagctcacagaggctggagatattttctatcaggttcttgaacccgagcagtcg
gacacttcacgaaatccagctgcagatgatgaatcagcatctcaacagcttccactgtcg
caagcagcgctaacggactctcagacggtggcgtcggacacatcaagcgacgagggcata
atcgggccgactcagggtctgagcatgcagcagtttgtgcctgaaacacagaacgtatac
tctgacacttcagctgatgattcagaggcagaaagaaaaagacgaagattgaagaagttg
aatctggaggttgtcgttaacgacgatccagagctggacgaggggagcggatcggacgca
ggtgtaaaagatggaccgataaggacagctaatgctgatggtgctgtagaggaaagggtc
aacggctccagcagcttgagtcacgtggttcctactaagcagcagactccagaagagctc
agcgacaccaccctcatcaagtggaaacactggctccagaaagtgatccacaagagccac
caaaagaatcctcatccacgccacctgccgcatttctccatccccacagaagacgtcctc
caaccatccaagaacgccgagacagatcgaacagaagagaagcgggtgcagagcgtgagg
cgtgacctgagagggtgcatgtccaaccgctctctgctagttaatgacaccgtctccgcc
tctgccagacctgaagagacggtaccgattccagacccggtggacacgggagtctgggcc
gacccgctcagccaacgcctgaccactgcgtggcagggagacgaggcgtggagggcgtgg
tgggtggagaagctgggactgaacagggaggagaaggtgcaagctctaaagaggaagagg
aggagggagaaggaggcgaggagagcctccggccaaagcctggtcctgtccgggagcttc
acctcgtccgtcagctaccagtctgagttggattatttctcagaatcaaccggctggtcc
tcggaggcgagccagagggggttgtcagactcagaggggatggggccgtcccagcttaag
tccttcatggagcaggagacagagatagcagagacacccaacgctgtgcagactgacact
ccaggtccaacgccaaccgccacacctcagaagacgaaagagaaacaaagtgaccagcag
accccccgcaccccttccctgtcccagacactcccacctgaatccacaccagccagtcag
aagaggagaagacgtccagcagaggactacctcagctctctgtttgcaccacaggaccat
ccctcgcagcacgacggtcacttcctggacgaagggggggtcacacagcccacagctcaa
ctcgtggcctctctcccctcccatcagcccaggagcgctcagaggagcgtcagggtggat
ctgtctcaggactcctggtcaggtttctcccagtctctgcccatctcccagagttcacag
ggtcgaccgggactgtcacaggcgtcgcaagcgaagaagaagaagtctcgaatgggattt
tga
DBGET
integrated database retrieval system
