Scomber scombrus (Atlantic mackerel): 133995836
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Entry
133995836 CDS
T10651
Name
(RefSeq) elongation factor 1-alpha
KO
K03231
elongation factor 1-alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133995836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133995836
03016 Transfer RNA biogenesis [BR:
ssco03016
]
133995836
03012 Translation factors [BR:
ssco03012
]
133995836
04131 Membrane trafficking [BR:
ssco04131
]
133995836
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133995836
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
133995836
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
133995836
Translation factors [BR:
ssco03012
]
Eukaryotic type
Elongation factors
133995836
Membrane trafficking [BR:
ssco04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
133995836
Exosome [BR:
ssco04147
]
Exosomal proteins
Proteins found in most exosomes
133995836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Semialdhyde_dhC
Gtr1_RagA
Motif
Other DBs
NCBI-GeneID:
133995836
NCBI-ProteinID:
XP_062291300
LinkDB
All DBs
Position
16:11015010..11018803
Genome browser
AA seq
461 aa
AA seq
DB search
MGKEKVHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
DKLKAERERGITIDIALWKFETARYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSQARFEEITKEVSTYIKK
IGYNPATVAFVPISGWHGDNMLEGSDKMSWFKGWKVERKEGNASGTTLLEALDAIVPPSR
PTDKPLRLPLQDVYKIGGIGTVPVGRVETGLLKPGMVVTFAPPNLTTEVKSVEMHHESLP
EAVPGDNVGFNVKNVSVKEIRRGYVAGDSKNDPPKAASSFNAQVIILNHPGQINEGYAPV
LDCHTAHIACKFKELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYAP
LGRFAVRDMRQTVAVGVIKAVDTKEISGKTTKAAEKASKKK
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaggaaaaggtccacatcaacatcgtggtcattggccatgtcgactccggcaaa
tccacctccaccggtcatctgatctacaaatgcggtggtatcgacaagagaaccatcgag
aagttcgagaaggaagccgctgagatgggcaagggctccttcaagtacgcctgggtgctg
gacaaactgaaggccgagcgtgagcgtggtatcaccattgacattgctctgtggaagttc
gagaccgccaggtattacgtgaccatcattgatgcccctggacacagggacttcatcaag
aacatgatcactggtacctctcaggctgactgcgctgtgctgatcgttgctgctggtgtt
ggtgagtttgaggctggtatctccaagaacggccagacccgtgagcacgccctgctggcc
ttcaccctcggtgtgaagcagctcatcgttggcgtcaacaagatggactccactgagccc
ccatacagccaggcccgtttcgaggagatcaccaaggaagtgagcacctacatcaagaag
atcggttacaaccccgccaccgttgcctttgtccccatctctggatggcacggagacaac
atgctggagggcagtgacaagatgagctggttcaagggatggaaagttgagcgcaaggag
ggcaatgccagcggaaccactctgctggaggctctggatgccattgtgccaccttcccgc
cccaccgacaagccccttcgtctgcccctgcaggacgtctacaaaatcggcggtattgga
actgtacccgtcggccgtgttgagactggtctcctgaagcccggtatggtcgtcactttc
gctccccccaacctgaccactgaggtgaagtctgtggagatgcaccacgagtctctgcct
gaggccgtccccggtgacaacgttggcttcaacgttaagaacgtgtccgtcaaggaaatc
cgtcgtggatacgttgctggtgacagcaagaacgacccacccaaggctgctagcagcttc
aacgctcaggtcatcatcctgaaccaccctggccagatcaatgagggttatgcccccgtt
ctggactgccacactgctcacattgcctgcaagttcaaggagctcatcgagaagatcgac
cgtcgttccggcaagaagcttgaggacaaccccaagtttgtcaagtctggagatgccgcc
attgtcaaactgatcccacagaagccaatggttgtggagcccttctccaactacgctccc
cttggtcgtttcgccgtgcgtgacatgaggcagaccgtggctgtcggtgtcatcaaggct
gttgataccaaggaaatttccggaaagacaaccaaggctgcagagaaggcctccaagaag
aaatga
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