Scomber scombrus (Atlantic mackerel): 133996241
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Entry
133996241 CDS
T10651
Name
(RefSeq) aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
133996241
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
133996241
Lectins [BR:
ssco04091
]
C-Type lectins
Lecticans
133996241
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133996241
NCBI-ProteinID:
XP_062291832
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Position
1:34494123..34517816
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AA seq
1673 aa
AA seq
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MIRWIVLLSVCLNVISATFDYVFTDPEDVLSVGIPLEGPQRPLLGATLTLPCYFEDHTVP
DPGAPTIAPLSHRIKWSLVTKEKVTTILVAMEGQVRISESYLDRVNLVGYPATPTDATIQ
ISELRSNDTGVYRCQVQHGIEDNHDDVSVQVQGMVFHYRAIMGRYSLTFEKAKDACSQNS
AVLASPEQLQAAYDDGFHQCDAGWLSDQTVRYPIHDVRVNCYGDKEELPGVRTYGVRELN
ETYDVYCFTEKMTGRVFYTAAGEKFTFDEAAEACSKQGAQLATTGQLYLAWQGGMDVCNA
GWLGDRSVRYPINVRRPQCGGGLLGVRTVYLHTNQTGYPFPESRYDAFCYTGKSSFIHLK
KLSDEDGSGIIEEGSGVLSVTTVTQSPEVFFRRTTTESEAVGEVETQQPTVVDFSFTVSP
TELPLPQPPSVTEVITEWIQPVTARPDVAREPSKGFVMPSTGVVFHYRSGSGRYVFTFIE
AQLACQSVGATIAAPEQLQAAYEAGYHQCDAGWLRDQTVRYPIVFPRDKCAGDLEDQPGV
RSYGLMPADERFDVYCYADGLKGEVFHVASAEGFTYDEAASSCQEQNAILASTGELYAAW
RLGFDKCRAGWLLDRSVRYPINNPRTECGAGKTAVHTVYAHRNQTGYPDLHARFDAYCFR
ADITLIANETGLNITEIQEALVNLTSVTDLLRPAVPSIVQPIPVEPSGSGSGSADFGSGS
TADSGSGGHSGDMSGSGDLTGSGHPSGSGDQGISGDLSGSGHPSGSGDQGISGDMSGSGH
QSGSGHQVISGDLSGSGDQVISGDLSGSGHQVISGDLSGSAHQSGSGDQAISGDLSGSGD
LFGSGDPSGSGDLVGSTSAELPSGASGLTSVDVSGSGLSGEGSGITVSFSGIDSILSGEG
SASGRLQEAEEGSTEILIFPSSEAGSGVLSGSGDRSGSGSGSGLDSGMSSGFMTSRDFSG
FSGYPSGFSGSGSASGQSGDVSGSGSAQISLIDEELVDVSTSITHKEYELGGGLLAFSGS
GSGVLSGDLSGSASGSGSDVFSGVSFLGSGLIDLTESSSTEQEASGVSSGVSFLGSGFTD
LTESSSTEQEASGVSSGVSFLGSGLIDLTGSSSTEQEASGGFSGVSFLGSGLIDLTGSSS
TEQEASGGFSGVSFLGSGLIDLTESSSTEQEASGFLLYSSGQGSGGLVSGFGSSGFHSGS
GSGMSGLESSASGEEGSVTFLSGDFTTGVSGGNSVAMEIGQGSVEYSGEGSGSSGSGFYS
GSGDTRLSTSSGISSGAPSGDLPQVMMPSPSSEWALTETSTTGPEQTLSEVQHETPSLAL
APAGLAAPPTVQAPASVQAPGVVEEAELVEGGLNPCEPNPCGTASCTVEDRVAVCHEVDV
CHSNPCANGATCVESADSYKCLCLPSYGGKRCEIDEQLCEEGWTKFQGNCYLHFPDREVW
EDAEQRCRDLNAHLVSIITPEEQTFVNSNGQDYQWIGLNDKTVEGDFRWTDGTPLQYENW
RPNQPDNYVNSGEDCVVMIWHESGQWNDVPCNYHLPFTCKKGPVSCGAPPEVDNAHMFGN
RREEYPVNSIIRYQCNPGFTQRHPPVVRCKADGQWEKPQVQCTDALLLLYYSRGLGSIYE
PLIDGTLRRPSSIRLELHCGYLINLSLLSSADSNRIEPTQNHQRIISPDNYEY
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggtggattgtgcttctgtctgtgtgtctgaatgtcatctcagcaacatttgac
tacgttttcacagacccagaggacgtgctgagtgttggtattcctctggaagggccacag
cgccctctactgggagcaacactgacattaccgtgttacttcgaggaccacactgtccca
gacccaggagctccaaccatcgctcccctctctcaccgcatcaaatggagcctcgtcacc
aaagaaaaggtcacgaccatcttagtggccatggaaggacaggtgcgtatcagcgagagc
tacctggacagggttaatctggtgggctaccctgcaaccccgacggacgctaccatccag
atatccgaactacggtccaatgacacgggagtctaccgctgtcaggttcagcatggcatc
gaggacaaccacgatgacgtcagtgtgcaagttcaaggtatggtgttccactaccgggcc
atcatgggccgctacagtctgacctttgagaaggcgaaggatgcgtgttcccagaacagt
gcagtcctggcttcacctgaacagcttcaagcagcttacgatgatggtttccaccaatgt
gacgctggatggctctctgatcagacagtcaggtacccaatccatgatgtacgtgtgaac
tgctacggtgacaaagaggaacttcctggggtcaggacttatggagtgagagagctcaat
gagacttatgatgtctactgctttactgagaagatgacaggcagagttttctacactgcc
gcaggggaaaagttcaccttcgatgaggctgcggaggcgtgctctaagcagggggctcaa
ctggccaccacaggtcagctgtacctggcctggcagggtgggatggacgtctgtaacgct
ggctggctgggagacaggagcgtccgctaccccatcaacgtccgacggccgcagtgtgga
ggaggtctgctgggagtgcgaactgtttacctccacaccaaccagacaggatacccattt
cctgagtctcgctatgatgcattctgctacacaggtaagtcttcatttattcatttgaag
aagttaagtgatgaagacggctcaggcatcatagaagagggaagtggcgtgttgagtgtt
accacagtgacacagagcccggaggtgttcttcaggaggacgaccacagagagcgaggcg
gttggagaggtggagactcagcagcccaccgtcgtggacttcagcttcacagtgagcccc
accgagctgccgctacctcagccccccagcgtcacggaggtcatcaccgagtggatacag
ccagtcaccgcccggcccgacgtggccagggagcccagcaaaggctttgtgatgccttca
actggtgtggttttccattaccgctcaggatctggtcgctatgtcttcaccttcattgag
gcccagctggcctgccagagtgtcggtgccaccattgccgccccggagcagctccaggca
gcatatgaggctggatatcaccagtgtgatgcaggatggctccgggaccagactgtcagg
tatcccattgttttccctcgcgataagtgtgctggagatttggaagatcaacctggagtt
cggtcttatggtctgatgccagcagatgagagatttgatgtgtactgctacgctgatggg
ctaaaaggtgaggttttccatgttgcctccgctgagggtttcacttacgacgaggctgct
tctagctgtcaagagcagaacgccatcctggcctccaccggcgagctctacgcagcctgg
agactgggtttcgacaagtgccgtgccggctggctcttggatcgtagcgtccgttatccc
attaacaaccctcgcactgagtgtggagcggggaagacggcagtacacactgtgtacgct
caccgcaaccagaccggctaccctgaccttcacgccagatttgatgcatactgtttcaga
gctgatattacacttattgcaaatgaaactgggctgaacatcacagaaatccaggaggcc
ctcgtgaacctgacgtcagttactgatttattgaggcctgctgttccctccattgtccaa
cccatccctgtggagccttcaggctctggttcaggctcagcagactttggctcagggtct
acggctgatagcggctctgggggtcactctggagacatgtctggatctggagacttgact
ggttctggacacccgtctggttcaggagaccagggcatctctggagacttgtctggttct
ggacacccgtctggttcaggagaccagggtatctctggagacatgtctggttctggacac
cagtctggttctggacaccaggtcatctctggagacttgtctggttctggagatcaggtc
atctctggagacttgtctggttctggacaccaggtcatctctggagacttgtctggttct
gcacaccagtctggttctggagatcaggccatctctggagacttgtctggttctggagac
ttgtttggctctggagatccgtctggctccggagacctggtcggcagtacaagtgcagag
ctgcccagtggagcatcgggtcttaccagtgtagatgtttctggatcaggactcagtgga
gaaggatccggcatcactgtcagcttttcaggcattgacagcatactgtctggagaaggt
tcagcttcaggacgactacaagaagccgaagagggaagcacagagatccttatcttcccc
tcatctgaagcaggctctggagtgctcagtggtagcggggacaggtctggatctggcagt
ggatccggtttagactctggcatgtcatctggtttcatgaccagccgggacttttccggg
ttcagtggttacccatcaggattctctggctctggaagtgccagtggacagtcaggagat
gtttcaggaagcggaagcgctcagatatcactcatagatgaggaactggtcgatgtgtcc
acaagtatcacccacaaggagtatgagcttggtggaggccttctggcattcagtggctca
ggatccggggttctcagcggggatctcagtggctcggcctctgggagtggctctgacgtc
ttctcgggtgttagctttttggggtcgggcctcattgacttaacagagtcgtcttctacg
gagcaagaggcctctggggtttcctcgggtgttagctttttgggttcgggcttcactgac
cttacagagtcgtcttctacggagcaggaggcctctggggtttcctcgggtgttagcttt
ttgggttcgggcctcattgacctaacaggatcgtcttctacggagcaggaggcttctggg
ggtttctcgggtgttagttttttgggttcgggcctcattgacctaacaggatcgtcttct
acggagcaggaggcttctgggggtttctcgggtgttagctttttgggttcgggcctcatt
gaccttacagagtcatcttctacggagcaggaggcctctgggtttttactctacagctct
ggacagggaagtggtggacttgtgtcaggatttggaagctcgggcttccactctgggtct
ggatcaggaatgtctggactggagtcctcagcgagcggggaagaaggcagtgttacattc
ttgagtggggattttacgacaggggtatccggaggcaattcagtggctatggagatcgga
caagggtcggtggagtacagcggagaaggaagcggcagcagcggcagtggcttctactcc
ggcagcggagatacccgcttgtccacgtccagcggcatttcctcaggagctccctctgga
gatcttccacaggtgatgatgccctctccatccagtgagtgggcactgacagagaccagc
accacaggaccagagcagaccctgagtgaagttcaacatgagacccccagccttgcactt
gcccctgcaggattggctgctcctcctactgtgcaggcaccagcttctgtgcaggcacca
ggcgttgtggaagaagctgagttggttgaaggtggccttaacccatgtgaacctaacccc
tgcggtactgcctcatgtacagtagaggatagggtcgctgtctgccatgaggtagatgtg
tgccattccaacccttgcgccaatggagccacctgtgtggagagtgcagactcttacaaa
tgcttatgcctgcccagctacggagggaaacgctgtgagatcgatgagcagctgtgtgaa
gaaggttggactaagtttcaggggaactgctaccttcacttccccgacagagaagtttgg
gaggatgctgagcagcgctgccgcgacctgaacgcacatctggtcagcatcatcacaccg
gaggagcaaaccttcgtcaactcgaacggacaggactaccagtggatcgggctgaacgac
aaaacagtagagggcgacttccgctggacagatggcactcctctgcaatatgaaaactgg
aggccgaaccagcccgataattacgttaactccggagaagactgtgtggtgatgatttgg
cacgagagcggccagtggaacgacgtgccctgcaactaccacctgccattcacctgcaag
aaaggaccagtgtcctgcggcgctccgccagaggtggacaacgctcacatgtttggtaac
aggagggaagagtatcccgtcaactccatcatccgctaccagtgcaacccaggcttcaca
cagcgccacccaccggtagttcgctgtaaggccgacggacagtgggagaagccgcaggtg
caatgtactgacgctctgctactcctttattattcccggggtctcggtagcatttatgag
cctttgattgatgggacattgaggaggcccagcagcatcagactggagctccactgcgga
tatcttattaacctctcgctgctgtcgagtgctgattcaaaccggattgagcctacgcaa
aatcaccaacgcatcatctcgcccgacaattatgaatactaa
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