Scomber scombrus (Atlantic mackerel): 133999502
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Entry
133999502 CDS
T10651
Symbol
cacna1aa
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133999502 (cacna1aa)
04020 Calcium signaling pathway
133999502 (cacna1aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133999502 (cacna1aa)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
133999502 (cacna1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
133999502
NCBI-ProteinID:
XP_062294684
LinkDB
All DBs
Position
18:17099663..17171830
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AA seq
2511 aa
AA seq
DB search
MARFGDEVPXQYGGGPGGGGPGGRGGSRQGGPHGHPHGHPRQGHGHGHGPXGGPGGQRVY
KQSMAQRARLWPSIXPIPVRQNCFTVNRSLFXFSEDNFVRKYAKKITEWPPFEWMILATI
IANCIVLALEQHLPDGDKTPLSERLDDTEPYFIGIFCFESGIKILALGFAFHKNSYLRNG
WNVMDFVVVLTGILSTVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQ
IGLLLFFAILMFAIIGLEFYMGKFHTTCFDNHTGEIREEFPCGTELPSRLCPEGTMCRKY
WLGPNYGITQFDNILFAILTVFQCITMEGWTELLYYSNDASGSAWNWMYFIPLIIIGSFF
MLNLVLGVLSGEFAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILADDDNE
NEYDGSRRRATKNHKSKAELLNPEEGEGDLAVGSPFARASLKSSKLEGSTFKRRERRLRF
LIRHVVKSQAFYWTVLCLVGLNTLCVAVVHYDQPEPLSDFLYFAELIFLGIFLSEMCIKM
YGLGKQAYLNSSFNCFDCIVICGSIFEVFWSIVQPGTSFGISVLRALRLLRIFKVTKYWA
SLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFENGTPSTNFDTFPAAI
MTVFQILTGEDWNMVMYDGIKSQGGVNKGMAFSVFFIVLTLFGNYTLLNVFLAIAVDNLA
NAQELTKDEQEEEEAASQKIALQKAKEVAEVSPLSAANLSIAANKVHSECHNATDPFLDC
KEQQKNHKGINKSVWEQRTKELRKQTLASSREALYNELDPDDRWKARTGREEQNNVNFAR
QIRPDMKTHLDRPLVVDPHENRNNNTNKTTANNSDLCVSQHHPADELHRQTRLHEHGGQT
GGGGGGGSGPVRAPLERGESTESRRSRKAEHHHHSSHVRLDATVIPGPGLEERPSRRHHH
TRSGTRGGGQSEHRKPRSHRKHAEDEDGGGGTGKTGRHKSKGVDGGGEGGEQEGAGDGGE
RRPRRNRHGNQTDGEGKKVCQHRRKDCSVPNLSTTRPIQKSLSRQDSQYSEDMDNLMNTK
LVSGSTPPSEGHPVNPVSNHTVAPGFGSALHLANSGTRGSLVTLDSYGNIGHHRANSIIR
LPHPDYTAVDMPIFPSTNAILQVNKNANTEPLPSKEDKDDDDDEKGGEGGTKPMPPFSSM
FILSTTNPFRRACHYICTRRYFEMCILLVIAMSSIALAAEDPVWPESPRNNVLRYFDYVF
TGVFTFEMLIKMVDLGLVLHQGSYFRDLWNILDFIVVSGALVAFAFTGGGGSSKGKDIST
IKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYLLFMFIFAVVAVQLFKG
RFFYCTDESKEFERDCRGEYLVYERDNEVKAQKREWKKYDFHYDNVAWALLTLFTVSTGE
GWPQVLKHSVDATYENQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDK
MMEDYSLEKNERACIDFAINARPLTRHMPQNKLSFQYRMWEFVVSPPFEYTIMAMIALNT
VVLMMKYDGASETYEGVLANLNIVFTSLFSMECVLKIIAFGVLNYFKDAWNIFDCVTVLG
SITDILVTELGMNNFINLSFLRLFRAARLIKLLRQGETIRILLWTFVQSFKALPYVCLLI
AMLFFIYAIIGMQLFGNIAIEEETESAINQHNNFRTFIQALMLLFRSATGEAWHEIMLSC
LGGKDCDVLSGNTEPECGSQFAYLYFVSFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILG
PHHLDEYVRIWAEYDPAACGRIHYKDMYSLLRVIDPPLGLGKKCPHRVACKRLLRMDLPV
ADDNTVHFNSTLMALIRTALDIKIAKGGVDKHQMDAELRKEMMAIWPNLSQKTLDLLVTP
HKSATDLTVGKIYAAMMIMEYYRQSKIKRSQALRDEQNRTPLLFQRVEPPSPTQDGGPGL
NNTLPPPETNETVNSLPVEGGIPESQSWVTARAQEMSQKAGSWSPEGHVEDSLGSMTNSQ
TVEMREMGQDGYSDTEHFPPMEGHGRAASMPRLPGDNQTINDSSPMKRSVSSLGHTRSGR
GHRDKGGPDDYNMDRVIPEEGRTSRHGHRRKDRGHRASERSLCRYTEGDTDLSTTTQSGD
LTSKDKDRDRDRGRSKDRKHHHHHHHHHGSVDKERYVAERGGEYGHRHSRDREHDRERER
ERDRRWSRSPSEGRDCMTHRQGSSSVSGSPVPSTSGTSTPRRGRRQLPQTPATPRPHVTY
SPVVRKAMPTPPAGPQGRAPAPAPRRFSPEPPQGQGPPPAGLPLAHHGTPRQGHHPPPRW
GDTGGGGGSMEGDGCFYNQDYQDYEPHHEPPAYEQSPMQGGNPHPHALVNHPLPPPPQPQ
PHNPHPPPQPHPVNNPHPHPPPHSQPSRTSPRTAHHAPPPTTALTGPVQGQVQPAAQRRL
PNGYRSSSPSKHLHGPPHTGPHKVPPPGGHPRGPRKGLHEPYSETEDDDWC
NT seq
7536 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggttcggagacgaggtaccgngccagtatggcggagggcccggcggagggggc
ccgggcggccgtggtggaagcagacaaggaggaccccacggacaccctcacggtcaccca
cggcaaggccacggccacggtcacggtccancaggggggcccggaggccaaagagtgtac
aagcagtcaatggcgcagagagcccgactatggccctctatannacccattcctgtgcgc
cagaactgttttactgtcaaccgctcgctgttcnatttcagtgaggataacttcgtgaga
aaatacgccaaaaagatcaccgaatggcctccatttgagtggatgattcttgccaccatc
attgccaactgcatagtcctggctctggaacaacatttgcctgatggggacaagacgccg
ctgtctgaacgcctggatgatacagagccgtacttcatagggatcttctgctttgagtct
ggaataaagatcctggcacttggcttcgccttccacaagaactcatacctgagaaatgga
tggaatgtcatggacttcgtggtggtgctcacagggatcctgtccactgtgggttccgat
ttcgacttgcggaccctcagggctgtacgagtattgaggcctctaaaactggtgtccggt
attcccagcttacaggtggtgctcaaatccatcatgaaggccatgattcctctgctgcaa
attggcctcctgcttttctttgccatcctcatgttcgccatcatcggcctggagttctac
atgggcaaattccacacaacctgctttgacaatcacacaggtgagatcagagaggagttt
ccatgtgggacagagcttccgtccaggctgtgtcctgagggcaccatgtgcagaaagtac
tggctgggaccaaattatggcatcacccagttcgacaacatcctgtttgctattctcacc
gtcttccagtgtatcaccatggagggctggaccgaactgctctactatagcaacgatgcc
tcagggagtgcatggaactggatgtacttcatccccctcatcatcatcggctctttcttc
atgctcaacctggtgttgggtgtgttatcaggggagtttgccaaagagagagagcgtgta
gagaacagaagtgagttcctgaagctcagaagacagcagcagattgaaagggaactcaat
ggttacctggagtggatctgtaaagctgaagaggtcatcttggcggatgatgacaatgaa
aatgaatacgatggctcccgtaggagagccacaaagaaccataagagcaaagctgaactt
ctaaacccagaggaaggggagggagatctggcagtagggtcaccatttgcccgtgccagc
ttgaagagctccaagctcgaaggatcaactttcaagcggcgggaacgacgtctacgcttc
ttaatcagacacgttgttaagtcccaagctttctactggactgtactgtgtttggtgggc
ctcaacactctgtgtgtggctgtagtgcactatgaccagccagagccactttcggatttt
ctatattttgctgaattaatcttcctgggaatattcctgtcagagatgtgtataaagatg
tatggcctgggcaagcaggcatacctcaactcctccttcaactgcttcgactgcattgtg
atatgtggtagtatatttgaagtgttttggtccattgtccagccgggcacatcatttggc
atcagtgtgctacgagctctcaggttattgaggatcttcaaagtcacgaagtactgggca
tctttacgtaaccttgttgtctctttgctcaactccatgaagtccatcatcagcttgctc
ttcctgctcttcctcttcatagttgtcttcgccttgctgggcatgcagctcttcggagga
cagtttaattttgaaaatggcactccttcaacgaacttcgataccttccctgcagcaata
atgacagtgttccagatcctgacaggcgaggactggaacatggtgatgtatgatggcatc
aagtctcagggcggagtaaacaagggcatggccttctctgtcttcttcatcgtactcaca
ctttttggcaactacactctgctgaatgtgttcttggccatcgctgtggacaatttagcc
aatgcacaggaactgaccaaggatgagcaggaggaagaggaggctgccagtcagaagatc
gccctgcagaaagccaaggaggtggctgaagtcagcccgctgtctgctgccaacctctcc
attgcagccaacaaagtacacagtgagtgtcacaacgctaccgacccctttctggactgc
aaggagcagcagaagaaccacaaagggatcaataagtctgtgtgggaacaacgcaccaag
gagctgaggaagcagactctggcatccagccgcgaggccctctataacgagctggaccct
gacgaccgctggaaggcaaggacagggagggaggagcagaacaatgtcaacttcgcacgg
caaatccgtccagacatgaagacccacctggatcggcccttggtggttgacccccatgag
aaccgcaacaacaacaccaataagaccactgcaaacaattcagacctctgcgtcagccag
caccatcctgctgatgagctccacaggcaaacacgcctccatgaacatggtggccagaca
ggaggtggtggtggaggaggctcaggtccagtcagggctccactggagcggggagagtcc
acagagagcaggcggagccgaaaagctgagcaccaccatcacagctctcatgtccgattg
gatgcgacagtgattcctgggcctgggttggaggagaggccgtcccggcgccatcaccac
accaggagtggcactcgagggggagggcagtcagaacacaggaagccccggtcacatcgt
aagcatgcagaagatgaagatggtggtggaggaactggaaaaacagggaggcacaagagc
aaaggggtggatggaggaggggaaggaggagagcaggagggagctggcgatggcggtgag
aggaggccaagaagaaatcgccatggtaaccagacggatggcgaggggaagaaggtgtgc
cagcaccgaaggaaggattgcagtgtccctaacctctctaccacaaggcccatacaaaag
agcctctccaggcaggatagccagtacagtgaggatatggacaacctcatgaataccaaa
cttgtctctggctccaccccacctagtgagggtcacccagtgaatccagtttccaaccac
actgttgccccaggctttggatctgcccttcatcttgctaacagtggcactcgtgggagt
ttggtcacattagatagctatgggaacatcggacatcaccgtgccaacagcatcatcagg
ctgcctcaccctgactacacagctgtagacatgccaatatttccatctaccaatgctata
ctgcaggtaaataagaatgccaacacggagcctttaccatcaaaagaggacaaagacgat
gatgatgatgaaaagggaggtgaaggaggaaccaagcccatgcctccattcagctccatg
ttcatcctgtccaccaccaacccgtttcggcgggcctgtcactacatctgtacccggcgt
tattttgagatgtgtatcctgctggtcattgccatgagcagtattgccctggcagctgaa
gaccctgtttggcctgaatcccctcggaacaatgttcttcgctatttcgactatgtcttc
acaggagtgttcacatttgagatgctgataaagatggtggatctagggttggtcttgcac
cagggctcttacttccgggacttgtggaacatccttgactttatagtggttagtggtgct
ctggtggccttcgccttcaccggcggcggggggagcagtaagggaaaagacatcagcacc
atcaagtctctgagggtactgcgagtgttgcgacctttgaagactataaaacgtcttccc
aaactgaaggcggtgtttgactgtgtggtgaactctctaaagaatgtgctcaacatcctg
attgtgtacttactcttcatgttcatcttcgctgtggtggctgtgcagctctttaagggg
cgcttcttttactgcactgatgaatctaaagagtttgagcgcgattgcaggggcgagtat
ctagtctatgaacgtgataacgaagttaaggcgcagaagcgggagtggaagaagtacgat
ttccactacgacaatgtggcttgggcccttcttaccctcttcaccgtatctaccggagag
gggtggccgcaggtgctgaaacattcagtggatgcgacttatgagaatcagggcccgagc
cccggatacaggatggaaatgtccatcttttacgtggtgtacttcgtggtcttccccttc
ttcttcgtcaacatcttcgttgctttaatcatcatcaccttccaagaacagggagataag
atgatggaggattatagtttagaaaagaatgagagagcctgcatagactttgctattaac
gccaggcctctgacccgccacatgccccagaataagctgagctttcaatacagaatgtgg
gagtttgtggtgtcgccgccatttgaatatactatcatggcaatgatcgccctgaacacg
gttgtactgatgatgaagtacgacggagcttctgagacttatgaaggtgtgttagccaac
ctgaacatagtgtttacatccctcttctccatggagtgtgtactcaagatcatcgccttt
ggagtcctgaattatttcaaagatgcctggaacatttttgactgtgtgaccgttctgggc
agcattactgacattctggtcactgagcttgggatgaataatttcatcaacctaagtttc
ctgaggctgttcagggcagctcgtctcatcaagctgctgaggcagggagaaaccatccgc
atcttgctttggaccttcgttcagtccttcaaggcactgccttatgtctgcctcctcatt
gccatgctgttcttcatctacgccatcattgggatgcagctgtttgggaatattgctatt
gaagaagagacagagagtgccatcaaccagcacaacaacttcaggaccttcatacaagct
ctcatgcttcttttcaggagtgcaacaggagaggcgtggcatgagatcatgctatcatgt
ctgggtggtaaggattgcgacgtcctgtcagggaatacagagcctgagtgtggcagccag
tttgcctacctctactttgtctccttcatcttcttctgctcattcttgatgctgaatctg
tttgtagccgtcatcatggacaactttgaatacctgactagagattcttctatactggga
cctcaccacctggatgagtatgtcaggatatgggccgagtatgatcctgctgcctgcggg
cgcattcattataaggacatgtacagtttattacgagttatcgacccgcctctcggctta
ggcaagaaatgcccccatagggtggcctgcaagagactactccgtatggatctgcctgtg
gctgacgataacacagtccactttaactccactctcatggccttgatccgcacagcgctg
gatatcaagatcgccaagggtggtgttgacaagcaccagatggatgcagaactgaggaaa
gagatgatggcgatctggcccaatctttcccagaagactctggatttgctggttacacca
cacaagtcagccacagacctgacagtggggaaaatctacgctgccatgatgatcatggag
tactaccgccagagcaagatcaaacgatcacaggctctccgggatgagcagaatcgaacg
ccattactgtttcagcgcgtggagccaccttcccccacccaggatgggggcccgggacta
aacaacactctacctccacctgagacaaacgagactgtcaacagcctgccggtggagggg
gggatcccggagagtcaatcatgggtgacagctcgtgctcaggagatgtcccagaaagcc
ggcagctggagccctgagggacatgttgaagatagcttgggaagcatgaccaactctcag
acggtagagatgagagagatggggcaggatggttactcggatactgagcactttccacca
atggaaggccacggcagggccgcttccatgccccgcctcccaggcgacaaccaaaccatc
aatgacagcagtcccatgaagcgctctgtctcatcactgggccacacccgatctggacgt
ggtcacagagacaaaggagggccagatgactacaacatggatcgtgtaatacctgaggag
ggtcgaacttccagacatggacaccgtcgaaaagatcggggtcatcgggcctctgagagg
tccctctgtcgctacacagagggtgacacagacctgagcacaaccacccagtcaggtgac
ctgacgtccaaggacaaagatcgtgacagagatcgtggccggtccaaagaccgcaagcac
caccaccatcatcaccaccaccacggctctgtggacaaggagcgctatgtagcagagcga
gggggcgagtatggacacaggcactcccgcgacagagaacatgaccgggagagagagaga
gaaagagaccgacgttggtcgcgctcacctagcgagggtcgcgactgcatgacacacaga
cagggcagtagttcggtcagcggaagtcccgttccctcaacctcggggaccagtacacca
cgccgaggccgacggcagttgcctcagacccccgcaacacccaggccccatgtcacctac
tcccctgtggtccgcaaggccatgcccacaccacctgcggggccacagggccgagcccca
gccccagccccccgccgcttttctcctgagcctcctcaaggccagggccctccccctgct
ggcctcccattggcccaccatggcacacctcgccagggtcatcatcccccacctcgctgg
ggagatacaggtggaggaggtggctccatggagggggatggctgcttctacaaccaggac
taccaggactacgagccccaccatgaaccacctgcctatgagcagagtcccatgcaaggt
ggcaacccccatccacatgccctggtcaaccacccactgccacctcccccgcaaccacag
ccacacaacccccaccctcctcctcagccacaccctgtaaacaacccccaccctcatccg
ccgccccactctcagcccagtcgcacctcacctaggactgcccaccatgcgccccctcct
accactgccctgactgggccagtgcaaggacaagtgcagcctgctgcccagcgccgccta
cccaatggctaccgctcttcatcaccttccaaacatctccatggacccccgcatactggg
cctcacaaggtcccccctcctggtgggcatcctaggggtccccgtaagggcctgcatgaa
ccctacagcgagacggaggatgacgactggtgctag
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integrated database retrieval system
