Scomber scombrus (Atlantic mackerel): 134000263
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Entry
134000263 CDS
T10651
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit b
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04141
Protein processing in endoplasmic reticulum
ssco04210
Apoptosis
ssco04217
Necroptosis
ssco04218
Cellular senescence
ssco04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
134000263 (capn1b)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
134000263 (capn1b)
04217 Necroptosis
134000263 (capn1b)
04218 Cellular senescence
134000263 (capn1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134000263 (capn1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
134000263 (capn1b)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
134000263 (capn1b)
Peptidases and inhibitors [BR:
ssco01002
]
Cysteine peptidases
Family C2: calpain family
134000263 (capn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
CAPN13-like_C_EFh
DUF3295
Motif
Other DBs
NCBI-GeneID:
134000263
NCBI-ProteinID:
XP_062295611
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All DBs
Position
2:complement(36840129..36852199)
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AA seq
702 aa
AA seq
DB search
MFGGVSERIQKDRQRAGGLGSVQQAVQYLKQDYQALKEDCLQNGSMFEDPMFPAEPASLG
FKELAPHSAKTSGVEWKRPTELTEEPRFIVDGATRTDICQGALGDCWLLAAIGSLTLNQQ
LLHRVVPHGQSFNQEYSGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGSEFWSA
LLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVAEMYELKKAPRDLPRIINKALERGSLLG
CSIDITSTFDMEAVTFKKLVKGHAYSVTALRQVDYRGRQERLIRIRNPWGQVEWTGAWSD
SSSEWNSVDSAEKDELLCKMEDGEFWMSFQDFLRQFSRLEICNLTPDVLSEDATSFWTTV
TFEGGWRRGSTAGGCRNNPNTFWINPQYKVTLLEEDDDPEDDEAACSFLVALMQKDRRRH
RRHGQDMHTIGFAVYEIPDEHRGCQSVHMKKDFFLRHSSCARSETFINLREVSARLRLPP
GEYLIVPSTYEPSKEADFVLRVFTEKQSETEEMDDDVVANIDDEEEISESNIDDSFRSMF
AQLSGDDMEISVSELRTILNRVVSKHRDLQTDGFSMESSRAMVSLMDKDGSARLGLVEFQ
VLWNKIKKWLGIFREFDLDKSGCMSSYEMRLALENGGFKLNNKLYQMMVARYADNEIIDF
DNFTCCVIKLETMFKAFHQLDRDGTGTVQMNINEWLFMTMCG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgttcggaggcgtgtccgagcggatccagaaggaccggcagcgggccggaggactgggc
tcggtccagcaggcggtgcagtacctgaagcaggactaccaggccctgaaggaggactgc
ctgcagaacggatccatgttcgaggacccaatgttccctgcagaacccgcctcgctgggc
tttaaggaactcgctccacacagcgccaaaaccagcggagtggaatggaagagacccacg
gagctgacggaggagcctcggttcatcgtagacggagccacgaggacggacatctgtcag
ggagcgctgggtgactgctggctgctggctgcgattggctctctgactctgaaccagcag
ctgctgcatcgcgtcgttcctcacggtcaaagcttcaaccaggaatactccggcatcttc
cacttccagttctggcagttcggtgagtgggtggatgtggtgattgacgaccggctgccg
gttaaagatggagagctgatgtttgttcactctgctgaaggcagcgagttctggagcgct
ctgctggagaaagcctacgccaagttgaatggctcatacgaggcgttgtcaggcggcagc
accactgaaggctttgaggacttcactggtggtgtggcggagatgtacgagttgaagaaa
gctcccagagatcttccccgcatcatcaacaaagctctggagagaggctcgctgctcggc
tgctccatcgacatcaccagcaccttcgacatggaggcggtcaccttcaagaagctggtc
aaaggccacgcctactctgtgactgcactcagacaggtggattaccgcggccgccaggag
cgtctgatccggatcaggaacccctggggtcaggtggagtggaccggagcctggagcgac
agctcctcagagtggaactcggtggactcggcagagaaagacgagctgctgtgtaagatg
gaggacggagagttctggatgtcgtttcaggacttcctgcgtcagttctccaggctggag
atctgtaatctgaccccagacgtcctcagtgaagacgccaccagcttctggaccacggtg
acgtttgaaggcggctggaggagaggaagcaccgccggaggctgcaggaacaatcccaac
acgttctggatcaaccctcagtataaggtcacgctgctggaggaggacgacgaccccgag
gacgacgaggccgcctgcagcttcctggtggctctgatgcagaaggaccgccgccgccac
cgccgccacggccaggacatgcacaccatcgggttcgccgtctatgagattcctgacgag
caccgtggctgtcagagtgtccacatgaagaaggatttcttcctgcgtcactcctcctgc
gctcgctccgagaccttcatcaacctgagagaggtgagcgccagactccgcctcccgccg
ggcgagtacctcatcgtcccgtccacctacgaaccctccaaggaggccgacttcgttctg
agagttttcactgagaaacagtctgagaccgaggagatggacgatgacgtggtggcaaac
attgatgacgaggaggaaatctcagagagcaacattgatgattccttcaggtccatgttc
gctcagctgtccggagacgacatggagatctcagtgagcgagctcaggaccatcctcaac
cgagtcgtgtccaagcacagagacctgcagacggacgggttcagcatggagtccagtcga
gcgatggtcagcctgatggacaaagacggcagcgctcggctcggtctggtcgagtttcag
gttctctggaacaagatcaagaagtggctgggaatcttcagagagttcgacctggataaa
tctggctgtatgagctcgtacgagatgcgtctggcgctggaaaacggcggattcaaactg
aacaacaagctgtatcagatgatggtggctcgatacgccgacaacgagatcatcgacttc
gacaacttcacctgctgtgtgatcaaactggagacgatgttcaaggcgtttcatcagctg
gaccgagacgggacgggaacggttcagatgaacatcaacgagtggctctttatgaccatg
tgtggatga
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