Scomber scombrus (Atlantic mackerel): 134002500
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Entry
134002500 CDS
T10651
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
134002500 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
Other domain-containing proteins
Patched domain-containing proteins
134002500 (ptchd1)
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
134002500
NCBI-ProteinID:
XP_062297831
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Position
20:complement(18715598..18727422)
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AA seq
890 aa
AA seq
DB search
MLRQVLHAGLRTSFHALGRFVAGHPVFFASAPVLLSILLGASFSRYRVEEDVESMLAPKH
SLAKIEGNLVDSLFPVNRSKHSLYSDLQTPGRYGRVIVTTRKGSVLDPVHLDTILQLHRR
IYKMQVTVPATGFNSFNYSFSYLCLPDDKNICIIDDIIRSMEDIQSARNSNRSVPVLRYP
ITQLADGRQAYIGHQLGGVQGWAKGEGVRSARALQLTYYLQARGGLMDRVASQWEKAFCA
ELHHFAALHPKLGLYPSASSSLRTDFQFSSVLSRRPLLASLGMCGVLAVLCCSMRDCVRS
KPWLGLLALLSITLSGLTAAGILNLTGATYNSTYLGIPFVMLGHGLFGSFEMLSSWRRTR
EDQHVKERVASVFEDVMLRFSGSTMLHLMTLGLAASPLTNMEAVRLFCRTAALAVTISYV
YMLSFYSSCLVFTGYLETGYRHGCFCRRVPKPDRLDSKPAWYRCLMYTRYQDETQATNTS
NTDSHLLLGCMRRCYGDWITNTYVKPFVVLLYLVYISFGLMGFLQVTQGSDPSALVAMDT
ATVLYTRAQQRYFSSYSPVIGFYIYESAPYWNATVQRDLLEYAKGFQRISWLEAYLNYLS
EHNQSTSQPRENFTHTLRHSFLREPQFAHFADDIIFAERGQGEEPDVAASRIFLVAKTTE
NKREEMSVLLDTLRRLSLTSRVRFLIFNPSFVYLDRYAAAVSSPLRHSLLAVLFLLGLSS
LAVVEPLVSVWLGLTLLSVQFGVLGFMTLWGVELDCMSVLCLISALGHSADCSGPLLCGF
ASGRGESRTRWVRVALERHGVPSLQTLICYSAALVPVGSVRSNLTHTLFRCLTLTAGCSA
LHTLAFLPTLLTFLPPSKSRGHRPGEGQRQEVECVEMNDSTRVVDQITTV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccaggtgttgcacgcgggcctgaggacctccttccacgcgctgggccggttc
gtggcgggccacccggtgttcttcgcctcggcgcccgtgctcctctccatcctgctcggg
gcaagcttcagtcggtaccgcgtggaggaggacgtggagagcatgctcgcgcccaagcac
agcctggccaagatagagggcaacctggtggacagcctgttccccgtgaaccgctccaaa
cactcgctctactccgacctgcagacgccgggccgctacgggcgcgtaatcgtcactacc
cgaaaagggagcgtgttggacccggttcatctggacaccatacttcagctccacaggcgg
atctacaagatgcaggtgacagtcccggcgacaggctttaacagcttcaactactccttc
tcctacctctgtctccctgatgacaagaacatctgcataatcgatgacatcatccgttcc
atggaggacatccagtcagctcgcaactccaaccgttccgtcccagtcctgcggtacccg
ataacgcagctggcagacgggcgacaggcgtacattggtcatcagcttggcggcgtgcag
ggctgggccaaaggagaaggcgtacgttctgccagggcattgcagctcacctactacctc
caagcccgtggcggcctgatggaccgggtggccagccaatgggaaaaggccttttgtgct
gagttacaccactttgcagcgttgcaccctaagctagggctgtacccctctgcatcttct
tctttgaggacagacttccagttctcatcagttctgtcacgccgcccgctgttagccagc
ttggggatgtgtggtgtgctggctgtcctctgctgctctatgagggactgtgtgagatcc
aaaccctggttgggactgctggctttgttgtcaatcacactgtcaggtctcactgctgct
gggatcctcaacctgaccggggccacctacaactccacatacctgggcatccctttcgtc
atgctcggtcacggactcttcggctccttcgagatgctgtcatcgtggaggcgaacacgg
gaggaccagcacgtgaaggagcgagtggcgagcgtgtttgaggatgttatgctgcgattc
tccggctccaccatgctccatctgatgaccctgggcctggctgcctcgccactcacaaat
atggaggctgtccgactcttctgccgcaccgccgctttggcagtcaccatcagctacgtt
tacatgctgtccttctacagttcctgtctggtgttcaccggatacttagagactggatac
agacatggctgcttttgccggagagttcccaaaccggaccggctggactctaaaccggcc
tggtacaggtgtctaatgtacacacgttatcaggacgaaacacaggcaaccaacacgtcg
aacacggactctcacctgctgctggggtgtatgagacgttgctatggagactggatcact
aacacctatgtcaaaccctttgtggttctgctgtatctggtttacatctcctttggattg
atgggcttcctgcaggtgacccagggttctgaccccagtgcgctggttgccatggataca
gcgacagtattgtacactcgtgcccagcagcgttacttcagctcatactctcctgtcatt
ggattctacatttatgaaagtgccccctactggaatgccacagtacagcgagacctgctg
gaatacgccaaaggcttccagcgaatcagctggctggaagcctacctgaactacctatca
gaacacaaccagtccactagccaaccgcgggaaaacttcacccacacgctgcgccactcc
ttcctccgcgagccgcagtttgcccactttgcagatgacatcatatttgcagagcgtggc
cagggtgaggagcccgacgtggcggcgtcccgcatcttcctggtcgccaagacgactgag
aacaagcgcgaggagatgtcagtgctgctggacacgctgcgacgcctgtcactgacttca
cgagtccgcttcttaatcttcaacccctcctttgtctacctggaccgctacgctgcagcg
gtcagctccccgctcagacactcactgctggcggtgctgttccttttgggtctgtcctct
ctggctgtggtggagccgctggtctctgtgtggctgggcctcaccctgctgtctgtccag
ttcggggtgctgggtttcatgactttatggggagtggagctggactgcatgtctgtttta
tgtctgatctcagccttgggacactcggcagactgcagcggccccctcctttgtggcttc
gcatcaggtcggggtgaaagcaggactcgctgggtgagagtggccctggagagacatggg
gtgccctctctacagacgctcatctgctacagtgccgctttggtgcctgtgggctccgta
cgctccaacctcacacacacactctttcgctgcctcaccctcacggccggctgctcggcc
ctacacacgctggcgttcctgcccaccctcctcaccttcctgcccccttcgaagagccgg
ggccaccgtcctggagaagggcagagacaggaagtggagtgcgtggagatgaacgacagc
acaagagtggtagaccagatcactactgtctga
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