Scomber scombrus (Atlantic mackerel): 134005634
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Entry
134005634 CDS
T10651
Symbol
capn1
Name
(RefSeq) calpain-1 catalytic subunit
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04141
Protein processing in endoplasmic reticulum
ssco04210
Apoptosis
ssco04217
Necroptosis
ssco04218
Cellular senescence
ssco04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
134005634 (capn1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
134005634 (capn1)
04217 Necroptosis
134005634 (capn1)
04218 Cellular senescence
134005634 (capn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134005634 (capn1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
134005634 (capn1)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
134005634 (capn1)
Peptidases and inhibitors [BR:
ssco01002
]
Cysteine peptidases
Family C2: calpain family
134005634 (capn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_8
EF-hand_6
EF-hand_7
EF-hand_5
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
134005634
NCBI-ProteinID:
XP_062300551
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All DBs
Position
23:complement(9029450..9059565)
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AA seq
705 aa
AA seq
DB search
MEERIYATGMAARLRSQWDRDEGLGQNHKAVKFLGQDYESLKAQCLQSGRVFEDNLFPCA
ASSLGFKELGAKSSKTYGVRWMRPTELCQRPEFIVDGATRTDICQGALGDCWLLAAIASL
TLNDDLLHRVVPHGQGFGHGYAGIFHFQFWQFGEWVEVVIDDRLPVKDGKLLFVHSAEGT
EFWSALIEKAYAKLNGCYEALSGGSTSEGFEDFTGGVTEMYELRKAPSDLHSIISRAIER
GSLLGCSIDITSKLDMEAVTFKKLVKGHAYSVTGAKEVVYRGNMTKLVRIRNPWGEVEWT
GAWSDNSREWENVDRSVRSQLQNRSEDGEFWMSFSDFLREFTRLEICNLTADALQNSQLK
KWSSSLYQGEWRRGSTAGGCRNFPATFWLNPQFKILLKNPDSPGQSDCSFLVALMQKDRR
KKRREGKDMETIGFALYEVPAEAAGKSAVHLKREFFLTHGSSARSELFINLREVSSRLRL
PAGEYVIVPSTFEPHVEADFVLRVFSEKPADSEELDDDATAALPPETQLDESQIDAAFKN
LFRQLAGPDMEISVTELQTILNRIISKHKDLKTDGFTKEACRSMINLMDTDGSGKLGLAE
FHVLWEKIKRYLTIFREFDLDKSGTMSSYEMRMALESAGFKLTNHLFQLIILRYTEADMA
VDFDNFVTCLVRLETMFKTFKTMDTDTDGVISLNFTQWITLTMFA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcgcatttacgccacaggcatggccgcccggctgaggagccagtgggatcgg
gatgaaggtctggggcagaaccacaaagcggtgaagtttctgggtcaggattatgagtct
ctgaaagctcagtgtctccagagtggcagggtgttcgaggataacttgttcccgtgtgcg
gcttcgtctctgggattcaaggagctcggcgcgaaatcctccaagacctacggagtccgc
tggatgaggcccacggagctctgccagcgccctgagttcatcgtggatggagcgactcgc
acagacatctgtcagggagctctgggagactgctggctgctggctgccatcgcctcactg
accttaaatgatgacctccttcacagagtggttcctcatggacagggcttcggtcatgga
tacgccggcatctttcattttcagttctggcagtttggcgaatgggtggaggtggtgatt
gacgaccggctgccggtgaaagacgggaagctgctgttcgtacactcagcagagggcacc
gagttctggagcgcactgattgaaaaggcctacgccaagttgaacggatgttatgaggct
ctgtcaggcggcagcacgtcagagggctttgaggactttacaggcggcgtgacggagatg
tacgagctgaggaaagccccgtctgatctccacagcatcatcagcagggccatagagaga
ggatcactgctgggctgctccattgatatcactagcaaattagacatggaagccgtcacc
ttcaagaagctagtgaagggacatgcctactctgtgaccggtgcgaaagaggtggtgtac
agaggaaacatgaccaagcttgttcgtatcagaaacccctggggggaggtggagtggacc
ggagcctggagcgacaactccagagagtgggagaatgtggacaggtctgttagaagtcag
ctacaaaaccgcagcgaggatggtgaattctggatgtcattcagcgacttcctgcgcgag
ttcactcgtctggagatctgtaacctgacggccgacgccctgcagaacagccagctgaag
aaatggagctcctcactctaccagggtgaatggaggaggggcagtactgccggaggctgc
aggaactttccagcaaccttctggctgaacccccagttcaagatcttgctgaagaacccg
gactctcccggccaatcagattgcagtttcctggttgccctcatgcagaaagaccgcagg
aagaaacggcgggaaggcaaagacatggagactattggctttgctctctatgaggttcca
gcggaggctgcgggcaagtcagcagtccacctaaagcgagagttttttctgactcacggc
tccagcgctcgctcagagctcttcatcaacttgagggaggtcagctcacggttgcggctc
ccagctggggaatacgtcattgtgccctctactttcgagccccacgttgaggctgacttt
gtactcagggttttctcggaaaagcctgccgactctgaggagcttgatgatgatgctaca
gcggcgcttcctccagagactcaactagatgagagccaaattgacgcagccttcaagaat
ctcttcagacagctggccgggccggacatggagatcagtgtcacagaactgcaaactata
ctgaacaggatcatcagcaaacacaaagacctaaagacggacggcttcacaaaagaggct
tgtcgcagtatgattaacctcatggacactgacggcagtggaaagctgggactggcagag
ttccacgtgctctgggaaaagattaaacgatacctgactatattcagggaatttgacttg
gacaagtcgggcacaatgagctcctatgagatgaggatggctcttgagtcagcagggttc
aagctgacaaaccacctattccaacttatcatcctgcgctacacagaggcagacatggct
gtcgactttgacaactttgtcacctgtctggtcagattggagaccatgttcaaaaccttc
aagaccatggacacagatacagatggtgtcatatcccttaactttactcagtggattacc
ctgaccatgtttgcctag
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